Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_M17
         (933 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27E2.05 |cdc1|mis1|DNA polymerase delta small subunit Cdc1|S...    26   8.7  
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    26   8.7  

>SPAC27E2.05 |cdc1|mis1|DNA polymerase delta small subunit
           Cdc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 462

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 70  QQFSNXKFSCCLALRPSFVFIXSXKWP 150
           QQ+++  F+   ALRP      S KWP
Sbjct: 27  QQYASIYFARLTALRPRITEAASKKWP 53


>SPCC1450.11c |cek1||serine/threonine protein kinase
            Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 15/34 (44%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
 Frame = -1

Query: 888  ERPGXGI--H*AGNRKGAPXXQTXLXPGGGRFXY 793
            ERP   I  H +GNRKG     T   P  G F Y
Sbjct: 1014 ERPASSIPQHVSGNRKGRLRSNTISTPEFGSFTY 1047


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,797,509
Number of Sequences: 5004
Number of extensions: 42954
Number of successful extensions: 74
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 473333082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)