Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_M14
         (889 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po...    31   0.22 
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha...    29   0.88 
SPAC15F9.03c |nxt2|nft2, ntf2, ntf2, nft2, SPAC1B9.01c|nuclear t...    28   1.5  
SPAC23H4.10c |thi4||thiamine-phosphate dipyrophosphorylase/hydro...    27   3.6  
SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces pomb...    26   6.2  

>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 507

 Score = 31.1 bits (67), Expect = 0.22
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -3

Query: 443 HNTKYNQYLKMSTTTCNCNSRDRVVYGGNSADSTRE 336
           +++ YN+   M T++C+C+S  +  YGGN A    E
Sbjct: 47  YSSTYNEITNMDTSSCSCSSTPK-SYGGNLAPFDEE 81


>SPAC4F8.11 |||WD repeat protein, human WDR24
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 846

 Score = 29.1 bits (62), Expect = 0.88
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -3

Query: 443 HNTKYNQYLKMSTTTCNCNSRDRVVYGGNSA 351
           HN  +N + + S T+ +  SR+ V+  GNS+
Sbjct: 617 HNEMFNSFHRSSVTSASIKSREAVLSAGNSS 647


>SPAC15F9.03c |nxt2|nft2, ntf2, ntf2, nft2, SPAC1B9.01c|nuclear
           transport factor Nxt2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 123

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = +1

Query: 694 QYSMVFRLLVNDQGGYYILDD 756
           +YS VF L VN+ G YY+L+D
Sbjct: 97  RYSQVFHL-VNNNGNYYVLND 116


>SPAC23H4.10c |thi4||thiamine-phosphate
           dipyrophosphorylase/hydroxyethylthiazole kinase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 518

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -1

Query: 238 TPRETARPLDTMVKSPVFLTSTRGSLHLSKRPKTLL 131
           TPRETA+ L  ++ +P      R SL     PK LL
Sbjct: 207 TPRETAKELRNLIATPPCFAQARSSL---TTPKDLL 239


>SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = -3

Query: 383 RDRVVYGGNSADSTREQWXFQPAKYENDVLFFIYN 279
           R R+V G ++A  + + W F   +Y   ++F+++N
Sbjct: 162 RQRIVVGKHAAHFSLDHWIF-VVEYYAPIVFYVFN 195


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,163,524
Number of Sequences: 5004
Number of extensions: 62110
Number of successful extensions: 150
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)