Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_M06
         (881 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H5.05c |rps1401|rps14-1, rps14|40S ribosomal protein S14|Sc...   161   9e-41
SPBC18H10.13 |rps1402|rps14-2|40S ribosomal protein S14|Schizosa...   161   9e-41
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch...    28   2.0  
SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier homolog|Schizosaccha...    26   6.2  
SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual          26   6.2  
SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces pomb...    26   8.2  

>SPAC3H5.05c |rps1401|rps14-1, rps14|40S ribosomal protein
           S14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 139

 Score =  161 bits (392), Expect = 9e-41
 Identities = 79/119 (66%), Positives = 88/119 (73%)
 Frame = +1

Query: 133 LGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAML 312
           +GPQ   GE VFGVAHIFASFNDTFVH+TDL+G+ETI RVTGGMKVK DRDE+SPYAAML
Sbjct: 5   VGPQIRSGELVFGVAHIFASFNDTFVHITDLTGKETIVRVTGGMKVKTDRDESSPYAAML 64

Query: 313 AAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTPV 489
           AAQD A KCK +GITALHIK+RA            AQ          M+IGRIEDVTP+
Sbjct: 65  AAQDAAAKCKEVGITALHIKIRATGGTATKTPGPGAQAALRALARAGMRIGRIEDVTPI 123


>SPBC18H10.13 |rps1402|rps14-2|40S ribosomal protein
           S14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 139

 Score =  161 bits (392), Expect = 9e-41
 Identities = 79/119 (66%), Positives = 88/119 (73%)
 Frame = +1

Query: 133 LGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAML 312
           +GPQ   GE VFGVAHIFASFNDTFVH+TDL+G+ETI RVTGGMKVK DRDE+SPYAAML
Sbjct: 5   VGPQIRSGELVFGVAHIFASFNDTFVHITDLTGKETIVRVTGGMKVKTDRDESSPYAAML 64

Query: 313 AAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTPV 489
           AAQD A KCK +GITALHIK+RA            AQ          M+IGRIEDVTP+
Sbjct: 65  AAQDAAAKCKEVGITALHIKIRATGGTATKTPGPGAQAALRALARAGMRIGRIEDVTPI 123


>SPCC417.08 |tef3||translation elongation factor
           eEF3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1047

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +1

Query: 235 ETIARVTGGMKVKADRDEASPYAAMLAAQDVAEK 336
           ET+  V G +KV  + +  + Y A +AAQ V EK
Sbjct: 347 ETLKAVLGEIKVPTNEEVIAKYVANIAAQLVEEK 380


>SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 338

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = -1

Query: 143 WGPRVTWTSSLATLFFL 93
           +GPR+ WTSS ++L F+
Sbjct: 304 FGPRIFWTSSQSSLMFV 320


>SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 674

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +2

Query: 164 CLV*HTFSLHSMTHSFMLLIYPAGKLSPVSLVA*R*RLTVMKRHPTLLCWR 316
           CLV  T S++ + +  ++          VSLV    +L ++KR P LL W+
Sbjct: 317 CLVYSTCSINPIENEAVVTAALKATGGAVSLVDVSKKLPLLKRDPGLLSWK 367


>SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 631

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 41  FAFRFLTALKLKAEPWPREKTKLL 112
           +A RF+ A  L+ EPWP     L+
Sbjct: 31  YAMRFVDASTLEKEPWPASTALLV 54


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,938,441
Number of Sequences: 5004
Number of extensions: 53095
Number of successful extensions: 110
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)