Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP27_F_M06
(881 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0871 - 20441689-20441756,20442220-20442349,20442422-204425... 174 7e-44
02_01_0469 - 3359156-3359500,3359595-3359680,3359766-3359811,335... 167 1e-41
02_04_0100 - 19730137-19730237,19731215-19731344,19731419-197315... 165 5e-41
02_01_0045 + 307058-307552,308670-308716,308779-308866,309664-30... 50 2e-06
08_02_0250 + 14772746-14773037,14773141-14773203,14773458-147736... 30 2.8
01_06_0329 + 28515740-28516526,28516597-28516631 28 8.6
01_06_0326 - 28495621-28495655,28495726-28496512 28 8.6
>04_03_0871 -
20441689-20441756,20442220-20442349,20442422-20442507,
20444271-20444316,20444425-20444547,20445302-20445370
Length = 173
Score = 174 bits (424), Expect = 7e-44
Identities = 89/132 (67%), Positives = 98/132 (74%)
Frame = +1
Query: 94 RKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVK 273
+K + KEE VTLGP GE VFGVAHIFASFNDTF+HVTDLSGRET+ R+TGGMKVK
Sbjct: 27 KKTREPKEE-NVTLGPTVREGEYVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVK 85
Query: 274 ADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXX 453
ADRDE+SPYAAMLA+QDVA++CK LGITALHIKLRA AQ
Sbjct: 86 ADRDESSPYAAMLASQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSG 145
Query: 454 MKIGRIEDVTPV 489
MKIGRIEDVTPV
Sbjct: 146 MKIGRIEDVTPV 157
>02_01_0469 -
3359156-3359500,3359595-3359680,3359766-3359811,
3359897-3360016,3360622-3360624
Length = 199
Score = 167 bits (406), Expect = 1e-41
Identities = 92/155 (59%), Positives = 103/155 (66%)
Frame = +1
Query: 85 MAPRKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGM 264
M+ RK + KEE VTLGP GE VFGVAHIFASFNDTF+HVTDLSGRET+ R+TGGM
Sbjct: 1 MSKRKTREPKEE-NVTLGPTVREGEYVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGM 59
Query: 265 KVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXX 444
KVKADRDE+SPYAAMLA+QDVA++CK LGITALHIKLRA AQ
Sbjct: 60 KVKADRDESSPYAAMLASQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALA 119
Query: 445 XXXMKIGRIEDVTPVTIRLDP*EGWPKRTQAVICF 549
MKIGRI I+ PK + VICF
Sbjct: 120 RSGMKIGRIGKFRVSLIQ-------PKDIEIVICF 147
>02_04_0100 -
19730137-19730237,19731215-19731344,19731419-19731504,
19732410-19732455,19732558-19732680,19732779-19732781
Length = 162
Score = 165 bits (400), Expect = 5e-41
Identities = 84/131 (64%), Positives = 93/131 (70%)
Frame = +1
Query: 85 MAPRKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGM 264
M+ RK +E VTLGP GE VFGVAHIFASFNDTF+HVTDLSGRET+ R+TGGM
Sbjct: 1 MSGRKKTREPKEENVTLGPTVREGEYVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGM 60
Query: 265 KVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXX 444
KVKADRDE+SPYAAMLA+QDVA++CK LGITALHIKLRA AQ
Sbjct: 61 KVKADRDESSPYAAMLASQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALA 120
Query: 445 XXXMKIGRIED 477
MKIGRI D
Sbjct: 121 RSGMKIGRIAD 131
>02_01_0045 +
307058-307552,308670-308716,308779-308866,309664-309756,
309788-309950,310554-310627,310889-310927
Length = 332
Score = 50.0 bits (114), Expect = 2e-06
Identities = 23/31 (74%), Positives = 26/31 (83%)
Frame = +1
Query: 250 VTGGMKVKADRDEASPYAAMLAAQDVAEKCK 342
V GGMK+KAD DE+SPYAAML +QDVA CK
Sbjct: 211 VGGGMKIKADCDESSPYAAMLVSQDVALCCK 241
Score = 29.5 bits (63), Expect = 3.7
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +1
Query: 250 VTGGMKVKADRDEASPYAAMLAAQDVA 330
V GGM +K+D DE SP+ + + D++
Sbjct: 166 VGGGMNIKSDCDEPSPHCSCVGQTDIS 192
>08_02_0250 +
14772746-14773037,14773141-14773203,14773458-14773621,
14774126-14774220,14774517-14774728,14774972-14775009,
14775131-14775424,14775510-14775617
Length = 421
Score = 29.9 bits (64), Expect = 2.8
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = +3
Query: 357 GLAHKAPCYWWKQNKDPWSWCSVCTSGSCSFKYEDWP 467
G H PC+ W + W WC SG C + WP
Sbjct: 345 GKPHGWPCWGW-DGAEMWLWCQSKNSGHC---HIGWP 377
>01_06_0329 + 28515740-28516526,28516597-28516631
Length = 273
Score = 28.3 bits (60), Expect = 8.6
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -3
Query: 498 SDGNGGDIFNAANLHT*TSKSPKCRLSTRTRGLC 397
+DG+ GD+ +A T ++ S KC RT+G C
Sbjct: 203 ADGSFGDVLSAGFELTYSAHSDKCGKCERTKGWC 236
>01_06_0326 - 28495621-28495655,28495726-28496512
Length = 273
Score = 28.3 bits (60), Expect = 8.6
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -3
Query: 498 SDGNGGDIFNAANLHT*TSKSPKCRLSTRTRGLC 397
+DG+ GD+ +A T ++ S KC RT+G C
Sbjct: 203 ADGSFGDVLSAGFELTYSAHSDKCGKCERTKGWC 236
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,362,822
Number of Sequences: 37544
Number of extensions: 395122
Number of successful extensions: 863
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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