Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_M01
         (968 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   1.0  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   5.5  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   5.5  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   5.5  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   7.3  
EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    22   9.6  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   9.6  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.0 bits (52), Expect = 1.0
 Identities = 16/54 (29%), Positives = 18/54 (33%)
 Frame = +3

Query: 681 PXPXPXPSPXXXXPHXXTPPPPPPXXXLLXXPXPXPXSXPPXXPXITPPSXXXQ 842
           P P P P      P   +PP P         P   P S  P    I+P S   Q
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPP-PGGPPGAPPSQNPSQMMISPASGIHQ 73


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 5.5
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +3

Query: 126 ICACVNAAKTTYKICVPSQHLKACQDM 206
           + A  +++   + ICVP  + K C +M
Sbjct: 23  VIAAQDSSGRIFTICVPEIYSKECDEM 49


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 5.5
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +3

Query: 126 ICACVNAAKTTYKICVPSQHLKACQDM 206
           + A  +++   + ICVP  + K C +M
Sbjct: 23  VIAAQDSSGRIFTICVPEIYSKECDEM 49


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 5.5
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +3

Query: 126 ICACVNAAKTTYKICVPSQHLKACQDM 206
           + A  +++   + ICVP  + K C +M
Sbjct: 23  VIAAQDSSGRIFTICVPEIYSKECDEM 49


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 7.3
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 720 PHXXTPPPPPP 752
           P    PPPPPP
Sbjct: 338 PPKPAPPPPPP 348


>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 21.8 bits (44), Expect = 9.6
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +2

Query: 221 QIQGSHXTASPP 256
           Q+QGSH   +PP
Sbjct: 97  QVQGSHIPTAPP 108


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 9.6
 Identities = 8/19 (42%), Positives = 9/19 (47%)
 Frame = +2

Query: 509 PNXXGXPPXXXXPLPPRPK 565
           PN    PP    PL P P+
Sbjct: 208 PNYTACPPTLACPLNPNPQ 226


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,089
Number of Sequences: 438
Number of extensions: 3832
Number of successful extensions: 15
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31927896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)