Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_L23
         (891 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.17 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    28   2.1  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   2.1  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   2.7  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 31.5 bits (68), Expect = 0.17
 Identities = 14/41 (34%), Positives = 15/41 (36%)
 Frame = +3

Query: 270 TXXPXXXXXPXKPXXXXXPPPPPXXXGCPKSXRPXXPPPTP 392
           T  P     P        PPPPP   G   +  P  PPP P
Sbjct: 743 TPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 27.9 bits (59), Expect = 2.1
 Identities = 13/41 (31%), Positives = 13/41 (31%)
 Frame = +3

Query: 636 PXPTXXXXXXPPPPPXXXFXXPPXGXGGXXXXXXPXTXPPP 758
           P P       PPP P      PP    G      P   PPP
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782



 Score = 26.2 bits (55), Expect = 6.3
 Identities = 15/51 (29%), Positives = 15/51 (29%), Gaps = 2/51 (3%)
 Frame = +1

Query: 664 PPPPPXXXXFXXPXXGXGGXXXXXXXQ--PXPPXXXXGXXXXXKXPPPTPP 810
           PPPPP       P                P PP    G       PPP PP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +3

Query: 324 PPPPPXXXGCPKSXRPXXPPP 386
           PPPPP   G     +P  PPP
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPP 29



 Score = 27.5 bits (58), Expect = 2.7
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +3

Query: 324 PPPPPXXXGCPKSXRPXXPPP 386
           PPPPP     P S  P  PPP
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPP 30



 Score = 26.2 bits (55), Expect = 6.3
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +2

Query: 743 NPAPPXXXGGXXXXXXPPPPXP 808
           NP PP    G      PPPP P
Sbjct: 8   NPPPPPPPPGFEPPSQPPPPPP 29


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 16/54 (29%), Positives = 16/54 (29%), Gaps = 5/54 (9%)
 Frame = +1

Query: 664 PPPPPXXXXFXXPXXGXGGXXXXXXXQPXPPXXXXG-----XXXXXKXPPPTPP 810
           PPPPP       P  G G         P PP                 PPP PP
Sbjct: 313 PPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366



 Score = 26.2 bits (55), Expect = 6.3
 Identities = 11/30 (36%), Positives = 11/30 (36%)
 Frame = +3

Query: 666 PPPPPXXXFXXPPXGXGGXXXXXXPXTXPP 755
           PPPP       PP G G       P   PP
Sbjct: 314 PPPPSRRNRGKPPIGNGSSNSSLPPPPPPP 343


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 13/46 (28%), Positives = 14/46 (30%)
 Frame = +3

Query: 255  PXXXXTXXPXXXXXPXKPXXXXXPPPPPXXXGCPKSXRPXXPPPTP 392
            P    +  P     P  P      PPPP     P       PPP P
Sbjct: 1691 PVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.311    0.148    0.522 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,604,445
Number of Sequences: 5004
Number of extensions: 22640
Number of successful extensions: 72
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)