Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP27_F_L15
(862 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 32 0.12
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 30 0.49
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 30 0.49
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 24 3.2
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 6.0
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 26 7.9
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc... 26 7.9
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 31.9 bits (69), Expect = 0.12
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = +3
Query: 576 PPXQXFXKXPPXGXKXPXPPPXPPPP 653
PP PP G + P PP PPPP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPP 30
Score = 26.2 bits (55), Expect = 6.0
Identities = 10/24 (41%), Positives = 11/24 (45%)
Frame = +1
Query: 631 PPXXPPPPEKXPPKXXXXFXPPXF 702
PP PPPP PP PP +
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPPPGY 32
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 29.9 bits (64), Expect = 0.49
Identities = 17/60 (28%), Positives = 18/60 (30%)
Frame = +1
Query: 517 PPXXXXXXPPFXXXPXXGGPPLXXFXKKXPPGAKKXXXPPXXPPPPEKXPPKXXXXFXPP 696
PP P P PP+ PP K P PPP E P PP
Sbjct: 1150 PPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPP 1209
Score = 26.6 bits (56), Expect = 4.5
Identities = 14/52 (26%), Positives = 16/52 (30%)
Frame = +3
Query: 513 SPPPKXXXXXPLXXXPXXXGXPPXQXFXKXPPXGXKXPXPPPXPPPPXKKXP 668
+PPP + P G PP PP PP P P P
Sbjct: 1062 APPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPP 1113
Score = 26.6 bits (56), Expect = 4.5
Identities = 18/61 (29%), Positives = 20/61 (32%)
Frame = +1
Query: 514 PPPXXXXXXPPFXXXPXXGGPPLXXFXKKXPPGAKKXXXPPXXPPPPEKXPPKXXXXFXP 693
P P PP P G PP+ + PP K P PPP P P
Sbjct: 1170 PVPAPSSGIPPVPK-PAAGVPPVPP-PSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLP 1227
Query: 694 P 696
P
Sbjct: 1228 P 1228
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 29.9 bits (64), Expect = 0.49
Identities = 14/32 (43%), Positives = 14/32 (43%)
Frame = +3
Query: 558 PXXXGXPPXQXFXKXPPXGXKXPXPPPXPPPP 653
P G PP PP G PPP PPPP
Sbjct: 756 PIMGGPPPPP-----PPPGVAGAGPPPPPPPP 782
Score = 26.2 bits (55), Expect = 6.0
Identities = 15/59 (25%), Positives = 16/59 (27%)
Frame = +1
Query: 490 KKFFXXXXPPPXXXXXXPPFXXXPXXGGPPLXXFXKKXPPGAKKXXXPPXXPPPPEKXP 666
+K PPP P P PP PP PPPP P
Sbjct: 725 QKLLLKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 23.8 bits (49), Expect(2) = 3.2
Identities = 8/16 (50%), Positives = 9/16 (56%)
Frame = +3
Query: 624 PXPPPXPPPPXKKXPK 671
P P P PPPP P+
Sbjct: 234 PLPAPPPPPPPTLPPQ 249
Score = 21.4 bits (43), Expect(2) = 3.2
Identities = 7/14 (50%), Positives = 7/14 (50%)
Frame = +3
Query: 606 PXGXKXPXPPPXPP 647
P P PPP PP
Sbjct: 184 PSDYNPPPPPPPPP 197
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.2 bits (55), Expect = 6.0
Identities = 16/57 (28%), Positives = 19/57 (33%), Gaps = 2/57 (3%)
Frame = +3
Query: 504 PXXSPP-PKXXXXXPLXXXPXXXGXPPXQXFXKXPPX-GXKXPXPPPXPPPPXKKXP 668
P +PP P P P P + P P PP PPPP + P
Sbjct: 154 PASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPPLSQAP 210
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.8 bits (54), Expect = 7.9
Identities = 16/48 (33%), Positives = 17/48 (35%), Gaps = 1/48 (2%)
Frame = +1
Query: 514 PPPXXXXXXPPFXXXPXXGGPPLXXFXKKXPPGAKKXXX-PPXXPPPP 654
PP PP P PP+ PP A PP PPPP
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSV---PPPPSAPPMPAGPPSAPPPP 1734
>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 379
Score = 25.8 bits (54), Expect = 7.9
Identities = 16/52 (30%), Positives = 17/52 (32%)
Frame = -2
Query: 669 WGXFFXGGGXXGGGXXFFXPXGXFFXKXXKGGXPXXGGXXKGGXXXXXXGGG 514
+G F GGG GGG G GG GG GGG
Sbjct: 129 FGHAFAGGGGMGGGMGGMGGMDDDMDMDGGFGTRTRGGGMPGGFANMFGGGG 180
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,280,831
Number of Sequences: 5004
Number of extensions: 16946
Number of successful extensions: 149
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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