Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_L12
         (943 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    31   0.31 

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 30.7 bits (66), Expect = 0.31
 Identities = 26/70 (37%), Positives = 27/70 (38%), Gaps = 3/70 (4%)
 Frame = +1

Query: 712  PLXXPLGASPPVXXPXXLQXTC-APSXLRXSVXPFXXAPPVPFPXRCXS--XXPXLGXFP 882
            P+  P GA PPV  P        APS       P   APPVP P         P  G  P
Sbjct: 1132 PVPVPSGA-PPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPP 1190

Query: 883  XPPXSPXEGP 912
             PP  P E P
Sbjct: 1191 VPP--PSEAP 1198



 Score = 29.9 bits (64), Expect = 0.54
 Identities = 20/66 (30%), Positives = 22/66 (33%)
 Frame = +1

Query: 712  PLXXPLGASPPVXXPXXLQXTCAPSXLRXSVXPFXXAPPVPFPXRCXSXXPXLGXFPXPP 891
            P+  P  A+PPV  P        PS     V     APPVP P       P       P 
Sbjct: 1122 PVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPV 1181

Query: 892  XSPXEG 909
              P  G
Sbjct: 1182 PKPAAG 1187



 Score = 29.9 bits (64), Expect = 0.54
 Identities = 21/68 (30%), Positives = 22/68 (32%), Gaps = 1/68 (1%)
 Frame = +1

Query: 712  PLXXPLGASPPVXXPXXLQXTCAPSXLRXSVXPFXXAPPVPFPXRCXSXXP-XLGXFPXP 888
            P+  P    PPV  P        PS     V P   APPVP P       P      P  
Sbjct: 1180 PVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPV 1239

Query: 889  PXSPXEGP 912
            P    E P
Sbjct: 1240 PAPSSEAP 1247



 Score = 29.5 bits (63), Expect = 0.72
 Identities = 18/67 (26%), Positives = 21/67 (31%)
 Frame = +1

Query: 712  PLXXPLGASPPVXXPXXLQXTCAPSXLRXSVXPFXXAPPVPFPXRCXSXXPXLGXFPXPP 891
            P+  P    P +  P       APS +     P   APPVP P       P     P  P
Sbjct: 1065 PVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVP 1124

Query: 892  XSPXEGP 912
                  P
Sbjct: 1125 KPSVAAP 1131



 Score = 29.5 bits (63), Expect = 0.72
 Identities = 20/67 (29%), Positives = 21/67 (31%)
 Frame = +1

Query: 712  PLXXPLGASPPVXXPXXLQXTCAPSXLRXSVXPFXXAPPVPFPXRCXSXXPXLGXFPXPP 891
            P+  P  A PPV  P        PS     V     APPVP P       P     P  P
Sbjct: 1103 PVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVP 1162

Query: 892  XSPXEGP 912
                  P
Sbjct: 1163 KPSVAAP 1169


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,572,468
Number of Sequences: 5004
Number of extensions: 13763
Number of successful extensions: 22
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 479324640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)