Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP27_F_L11
(895 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0655 + 5546293-5546478,5546760-5546877,5550697-5550776,555... 30 2.9
04_04_0946 - 29579779-29580004,29580098-29580210 30 2.9
08_02_1147 - 24688686-24689729,24689875-24690036,24690339-246903... 29 5.0
12_01_0645 - 5468344-5470266 29 6.6
07_03_1530 + 27502546-27502671,27503487-27503561,27504670-275047... 29 6.6
01_05_0575 + 23372759-23373676,23373798-23373941,23374065-23374427 29 6.6
01_01_0128 - 1167904-1168749,1168790-1168863,1169419-1169491,117... 29 6.6
08_01_0397 - 3509186-3510291,3510322-3512335 28 8.7
04_03_0434 + 15889712-15889797,15890086-15890287,15891184-158913... 28 8.7
>12_01_0655 +
5546293-5546478,5546760-5546877,5550697-5550776,
5551329-5552345,5552523-5553344,5553528-5553800
Length = 831
Score = 29.9 bits (64), Expect = 2.9
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +1
Query: 298 CILKRNTDATIGLQFTPLHNIDRINTEVHGVIMNIPIPFPLP 423
C+ N D + F P ++D IN GV++ + P+P P
Sbjct: 448 CVAFTNVDTKLISVFRPFRDLDIINQGSEGVVVKLLQPWPPP 489
>04_04_0946 - 29579779-29580004,29580098-29580210
Length = 112
Score = 29.9 bits (64), Expect = 2.9
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Frame = +3
Query: 312 KHRRHDRPAVYTIA---QHRSHKYRSSRGHHEHPDTVP 416
KHRR R A + ++ +HR+H + R HH+ P P
Sbjct: 59 KHRRKKRAAAHAVSVRKEHRNH-HHHHRHHHQQPQPRP 95
>08_02_1147 -
24688686-24689729,24689875-24690036,24690339-24690368,
24690713-24690860,24691302-24691489
Length = 523
Score = 29.1 bits (62), Expect = 5.0
Identities = 25/75 (33%), Positives = 31/75 (41%), Gaps = 3/75 (4%)
Frame = +3
Query: 240 QTSDSPQRDG--ERMRRVVQSLY-TEEKHRRHDRPAVYTIAQHRSHKYRSSRGHHEHPDT 410
+ SDS + DG ER + V S + EEK RHD+ Q R R H D
Sbjct: 210 ENSDSEESDGRDERRKSVQASEHKREEKRSRHDKK---DHGQDSEDDERRKRRHATSEDD 266
Query: 411 VPPAGV*RVQGQRAD 455
P +GQR D
Sbjct: 267 EPRKSQKEKKGQRED 281
>12_01_0645 - 5468344-5470266
Length = 640
Score = 28.7 bits (61), Expect = 6.6
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = -3
Query: 188 AVMKNNIFVDKMRFGSMKNNYKTAR*RVHDSRAYXSTGXMKQIADSKXLRN 36
A + N+F+D+ + + Y +HD Y S G K++ ++ LRN
Sbjct: 500 AQLTANLFLDRFGGENEEPAYYVMNDTMHDFATYISQGECKRLTEAADLRN 550
>07_03_1530 +
27502546-27502671,27503487-27503561,27504670-27504746,
27505576-27507522,27508478-27508946,27509898-27510079,
27510746-27511208,27511295-27511691,27511810-27511937,
27512106-27512273,27512452-27512559,27512830-27512838
Length = 1382
Score = 28.7 bits (61), Expect = 6.6
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1
Query: 352 HNIDRINTEVHGVIMNIPIPFPLPESDACKDNGL 453
H++D + E H ++ +IP PL +AC N L
Sbjct: 585 HSLDTPDGEKHILLKDIPSTIPLDLKNACSQNSL 618
>01_05_0575 + 23372759-23373676,23373798-23373941,23374065-23374427
Length = 474
Score = 28.7 bits (61), Expect = 6.6
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Frame = -2
Query: 489 IIRQGSLLEGAGQPVVLARV-RLRQGER--YRDVHDDPVNFCIYAIDVVQWCKLQADRGV 319
++R LL AG+ +A V R G +R VH + F + ++ +W +L A +GV
Sbjct: 76 VLRDADLLFSAGEAAGVAAVGRALAGHPGPFRVVHIEHCMFAFHRPELAEWARLVAAKGV 135
>01_01_0128 - 1167904-1168749,1168790-1168863,1169419-1169491,
1171148-1171398,1171442-1171687,1172220-1172415,
1172796-1172876,1172966-1173169,1173671-1173880,
1173953-1174174,1174437-1174480,1174974-1175052,
1175066-1175227,1175337-1175564,1175786-1175815,
1175905-1176273,1176356-1176571,1177202-1177683,
1177930-1177975
Length = 1352
Score = 28.7 bits (61), Expect = 6.6
Identities = 24/75 (32%), Positives = 31/75 (41%), Gaps = 5/75 (6%)
Frame = +3
Query: 243 TSDSPQRDGERMRRVVQSLYTE-----EKHRRHDRPAVYTIAQHRSHKYRSSRGHHEHPD 407
TSDS R R + +S EK R RP + HR H +R HH+H
Sbjct: 1274 TSDSNNHKHRRSRSLEESSDDAAAGEYEKVRNGKRP--HKTGHHRHH-HRHHHHHHDHRS 1330
Query: 408 TVPPAGV*RVQGQRA 452
+ P R GQ+A
Sbjct: 1331 SSEPNDKKRQDGQKA 1345
>08_01_0397 - 3509186-3510291,3510322-3512335
Length = 1039
Score = 28.3 bits (60), Expect = 8.7
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Frame = +3
Query: 258 QRDGERMRRVVQSLYTEEKHRRHDRPAVYT---IAQHRSHKYRSSRGHHEHPDTVP 416
+++ ER RR + EE+ RR + A + + R + RSS HH H D P
Sbjct: 82 EKERERARRR-EERDREERSRRREAAAEEEEEDVDRDRKRRRRSSHHHHHHRDAEP 136
>04_03_0434 +
15889712-15889797,15890086-15890287,15891184-15891323,
15891420-15891559,15891762-15891913,15892773-15892902,
15892990-15893141
Length = 333
Score = 28.3 bits (60), Expect = 8.7
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +1
Query: 487 YKATLPILKSYPKVTVEVKWELQSEHGDL 573
+KATL +L SY E KWE ++ DL
Sbjct: 174 FKATLELLVSYKDQVAESKWENEAAAEDL 202
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,200,067
Number of Sequences: 37544
Number of extensions: 440462
Number of successful extensions: 1211
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1210
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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