Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_L09
         (835 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0618 - 24428987-24429331,24429946-24430387,24433358-24433434     29   4.6  
01_03_0296 + 14752484-14752591,14752885-14753076                       28   8.0  

>02_04_0618 - 24428987-24429331,24429946-24430387,24433358-24433434
          Length = 287

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +3

Query: 57  SLFKIRRVLFG*LPAWGARPFDLQRFVPIA--RFNXCYWFXP 176
           SL  + R+ +G L  WG +  +++RF P A    N C+ F P
Sbjct: 194 SLGLLPRIGYGRLTDWGNKAGEIKRFAPSAAQSTNQCFTFWP 235


>01_03_0296 + 14752484-14752591,14752885-14753076
          Length = 99

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +3

Query: 165 WFXPRXPXVWRLRNRSSPHPG 227
           W  P  P +W L + S PHPG
Sbjct: 9   WALPGIPLLWWLASSSYPHPG 29


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,653,419
Number of Sequences: 37544
Number of extensions: 263481
Number of successful extensions: 408
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2303447664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)