Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_L08
         (988 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z12018-1|CAD88219.2|  774|Caenorhabditis elegans Hypothetical pr...    31   0.96 
Z11126-8|CAD88221.2|  774|Caenorhabditis elegans Hypothetical pr...    31   0.96 
U29096-1|AAA68406.1|  105|Caenorhabditis elegans Neuropeptide-li...    29   3.9  
AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    28   8.9  
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    28   8.9  
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    28   8.9  

>Z12018-1|CAD88219.2|  774|Caenorhabditis elegans Hypothetical
           protein ZK643.8 protein.
          Length = 774

 Score = 31.5 bits (68), Expect = 0.96
 Identities = 19/64 (29%), Positives = 21/64 (32%)
 Frame = +1

Query: 700 GXXXGXGGXPXGXXXXVXSXXXXKXXGSXGLXGAGGXAWNKXXXXXCGGXGAXXLGGRXL 879
           G   G GG   G      +       G  G  G GG A        CGG G+   GG   
Sbjct: 166 GGGGGCGGGSSGGGGYAVAPSGGGGCGGGGSSGGGGYAVAPSGGGGCGGGGSSGGGGYAS 225

Query: 880 PPXG 891
            P G
Sbjct: 226 APSG 229


>Z11126-8|CAD88221.2|  774|Caenorhabditis elegans Hypothetical
           protein ZK643.8 protein.
          Length = 774

 Score = 31.5 bits (68), Expect = 0.96
 Identities = 19/64 (29%), Positives = 21/64 (32%)
 Frame = +1

Query: 700 GXXXGXGGXPXGXXXXVXSXXXXKXXGSXGLXGAGGXAWNKXXXXXCGGXGAXXLGGRXL 879
           G   G GG   G      +       G  G  G GG A        CGG G+   GG   
Sbjct: 166 GGGGGCGGGSSGGGGYAVAPSGGGGCGGGGSSGGGGYAVAPSGGGGCGGGGSSGGGGYAS 225

Query: 880 PPXG 891
            P G
Sbjct: 226 APSG 229


>U29096-1|AAA68406.1|  105|Caenorhabditis elegans Neuropeptide-like
           protein protein32 protein.
          Length = 105

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 13/24 (54%), Positives = 13/24 (54%)
 Frame = +3

Query: 108 GXXGIGGVVGXXXGXGGGWGV*GG 179
           G  G GG  G   G GGGWG  GG
Sbjct: 68  GGRGYGGRGGGWGGRGGGWGRGGG 91


>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 15/37 (40%), Positives = 16/37 (43%)
 Frame = -3

Query: 950 PEPXTXFPXXXTPTLRXXXLPXGGRXRPPRXXAPXPP 840
           P P T  P    PT      P GG   PPR  +P PP
Sbjct: 265 PPPRTGSPPPP-PTGSPPPPPAGGSPPPPRAGSPPPP 300


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 15/37 (40%), Positives = 16/37 (43%)
 Frame = -3

Query: 950 PEPXTXFPXXXTPTLRXXXLPXGGRXRPPRXXAPXPP 840
           P P T  P    PT      P GG   PPR  +P PP
Sbjct: 286 PPPRTGSPPPP-PTGSPPPPPAGGSPPPPRAGSPPPP 321


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 15/37 (40%), Positives = 16/37 (43%)
 Frame = -3

Query: 950 PEPXTXFPXXXTPTLRXXXLPXGGRXRPPRXXAPXPP 840
           P P T  P    PT      P GG   PPR  +P PP
Sbjct: 271 PPPRTGSPPPP-PTGSPPPPPAGGSPPPPRAGSPPPP 306


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,562,051
Number of Sequences: 27780
Number of extensions: 156194
Number of successful extensions: 685
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2573710548
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)