Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_L06
         (883 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein Ug...    31   0.16 
SPBC577.15c |||NASP family histone binding protein|Schizosacchar...    29   0.88 
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce...    27   2.7  
SPAPB1A10.07c |||sphingolipid biosynthesis protein|Schizosacchar...    27   3.5  
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha...    27   4.7  
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    26   8.2  

>SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein
           Ugo1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 31.5 bits (68), Expect = 0.16
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -3

Query: 278 AIAGPALINPSRTLRPTFSIFLKSFHLGSGAALTAP 171
           AIA P +I+P  ++RP  S+F+KS      A + +P
Sbjct: 202 AIADPNIISPIDSVRPLLSLFIKSITSAISALILSP 237


>SPBC577.15c |||NASP family histone binding
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 396

 Score = 29.1 bits (62), Expect = 0.88
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -3

Query: 395 LNSLKLEIHNYLQSCFKLNASLEFNDKVY 309
           L  L LEI N+ Q+   L  +LE+ +KVY
Sbjct: 205 LGELSLEIENFSQASQDLKTALEWKEKVY 233


>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 747

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 12/54 (22%), Positives = 28/54 (51%)
 Frame = -3

Query: 380 LEIHNYLQSCFKLNASLEFNDKVYFPNDFACPMTAIAGPALINPSRTLRPTFSI 219
           L +H YL +C +  + +E    ++    +   +T+I  P +++PS+ +    S+
Sbjct: 130 LLLHLYLLNCHEQGSLIEEPRPLFLDPSWKEKVTSIMSPQMVDPSKMISSCLSL 183


>SPAPB1A10.07c |||sphingolipid biosynthesis
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -3

Query: 125 FILPKFYSAGEFKIPNTISFDANAKNDQXLRIPY 24
           F+L  FY+A      NT S   N KND  +RI +
Sbjct: 373 FVLAAFYTASLLTNWNTTSVYENQKNDVFVRIGF 406


>SPBC776.09 |ste13||ATP-dependent RNA helicase
           Ste13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 485

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 676 NFLNIHSNKTYNVKLKDEL 620
           NF++ H NK Y + L DEL
Sbjct: 233 NFMDKHLNKPYEINLMDEL 251


>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1238

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 15/57 (26%), Positives = 24/57 (42%)
 Frame = -3

Query: 182  LTAPRASTNAKTKLKIRTKFILPKFYSAGEFKIPNTISFDANAKNDQXLRIPYXEXV 12
            LT   ++   K    I +      F+  G  KIP   SFD   K+ +   IP+ + +
Sbjct: 842  LTKDISTVKRKEYFGIESTSSKQPFHDTGSIKIPAKRSFDTIDKDFRSSNIPFADKI 898


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,975,366
Number of Sequences: 5004
Number of extensions: 55162
Number of successful extensions: 144
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)