Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_L05
         (954 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41540-2|AAK39230.1|  444|Caenorhabditis elegans Suppressor/enha...    44   2e-04
U35660-1|AAA85511.1|  461|Caenorhabditis elegans membrane protei...    44   2e-04
AF171064-1|AAD50991.1|  444|Caenorhabditis elegans presenilin SE...    44   2e-04

>U41540-2|AAK39230.1|  444|Caenorhabditis elegans
           Suppressor/enhancer of lin-12 protein12 protein.
          Length = 444

 Score = 44.0 bits (99), Expect = 2e-04
 Identities = 20/38 (52%), Positives = 25/38 (65%)
 Frame = +3

Query: 429 IXELELXYGARHVIKXFVPVTLCMLVVVAXXSSXNXYS 542
           + E EL YGA HVI  FVPV+LCM +VV   ++   YS
Sbjct: 38  VEEAELKYGASHVIHLFVPVSLCMALVVFTMNTITFYS 75


>U35660-1|AAA85511.1|  461|Caenorhabditis elegans membrane protein
           protein.
          Length = 461

 Score = 44.0 bits (99), Expect = 2e-04
 Identities = 20/38 (52%), Positives = 25/38 (65%)
 Frame = +3

Query: 429 IXELELXYGARHVIKXFVPVTLCMLVVVAXXSSXNXYS 542
           + E EL YGA HVI  FVPV+LCM +VV   ++   YS
Sbjct: 38  VEEAELKYGASHVIHLFVPVSLCMALVVFTMNTITFYS 75


>AF171064-1|AAD50991.1|  444|Caenorhabditis elegans presenilin
           SEL-12 protein.
          Length = 444

 Score = 44.0 bits (99), Expect = 2e-04
 Identities = 20/38 (52%), Positives = 25/38 (65%)
 Frame = +3

Query: 429 IXELELXYGARHVIKXFVPVTLCMLVVVAXXSSXNXYS 542
           + E EL YGA HVI  FVPV+LCM +VV   ++   YS
Sbjct: 38  VEEAELKYGASHVIHLFVPVSLCMALVVFTMNTITFYS 75


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,266,921
Number of Sequences: 27780
Number of extensions: 201222
Number of successful extensions: 263
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 263
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2475644248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)