Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_L04
         (880 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.              24   1.6  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   3.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   4.9  

>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 12/18 (66%), Positives = 12/18 (66%)
 Frame = +1

Query: 811 EMATAASXSSLXKXSNFP 864
           EMATAAS SSL K    P
Sbjct: 1   EMATAASSSSLEKSYELP 18



 Score = 21.8 bits (44), Expect = 8.6
 Identities = 8/9 (88%), Positives = 9/9 (100%)
 Frame = +3

Query: 852 FELPDGQVI 878
           +ELPDGQVI
Sbjct: 15  YELPDGQVI 23


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 415  LRVAPEEHPVLLTEAPLNPKANREKM 492
            LR+ P  H V+ T   +NP  + EK+
Sbjct: 1461 LRLGPCWHAVMTTYPRINPDNHNEKL 1486


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 17/47 (36%), Positives = 21/47 (44%)
 Frame = -1

Query: 307 PRLLRTSLSVPCRPSHPDGGAFRRSRGIRREEHHLLRNRPCTYRSHC 167
           PR++    +V CR S P G A   S    R E  L     C Y +HC
Sbjct: 704 PRIMDLD-NVMCRTSGPRGVAI-VSASTARSEQFL-----CRYEAHC 743


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 247,502
Number of Sequences: 438
Number of extensions: 5828
Number of successful extensions: 13
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)