Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_L02
         (947 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0456 + 34057986-34058186,34058295-34058978,34059063-34059434     33   0.25 
10_05_0096 - 9144683-9145270                                           30   3.1  
05_07_0359 - 29539294-29540832,29542366-29542518                       29   5.4  
03_01_0141 + 1116833-1117082,1117658-1118574,1119417-1119579,111...    29   5.4  
01_01_0933 - 7368672-7368785,7368860-7368895,7369581-7369715,736...    29   5.4  
02_04_0470 - 23183925-23184743,23184929-23185153                       29   7.1  
02_02_0272 - 8452994-8453187,8453850-8454975                           29   7.1  
12_01_0831 - 7688342-7688772,7690678-7692610,7693142-7693915,769...    28   9.4  
07_03_0723 + 20954827-20954905,20954974-20956277                       28   9.4  

>03_06_0456 + 34057986-34058186,34058295-34058978,34059063-34059434
          Length = 418

 Score = 33.5 bits (73), Expect = 0.25
 Identities = 18/39 (46%), Positives = 22/39 (56%)
 Frame = -1

Query: 392 GMRVPVRLSPCPFTLSRASPAEAALSLWRSLKSADPMAL 276
           G   P R+SP    L+   PAEAALS  RSL S  P ++
Sbjct: 138 GEEPPRRVSPAAVVLAVLLPAEAALSFIRSLSSLAPFSI 176


>10_05_0096 - 9144683-9145270
          Length = 195

 Score = 29.9 bits (64), Expect = 3.1
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -2

Query: 541 PXRRPAC*SWAGWEWRWASS*SRTPWRSG 455
           P RR    SW G EWRW  +  +   R+G
Sbjct: 64  PRRRAVVRSWRGGEWRWQDADGQQRGRTG 92


>05_07_0359 - 29539294-29540832,29542366-29542518
          Length = 563

 Score = 29.1 bits (62), Expect = 5.4
 Identities = 24/85 (28%), Positives = 33/85 (38%)
 Frame = -1

Query: 413 PSCSPKPGMRVPVRLSPCPFTLSRASPAEAALSLWRSLKSADPMALSTFLSLPVRGTFRA 234
           P    KPG   P R +P P   S +S A AA +L   +K           + P+R   + 
Sbjct: 155 PVLEAKPGRGRP-RKNPLPVASSTSSAAAAATALSLRVKRGPGRPRKNAAATPLRLGVKR 213

Query: 233 APEVPSEFTVKLPACLRARVGTCLP 159
            P  P +     P  L A+ G   P
Sbjct: 214 GPGRPRKNAAATPLRLGAKRGPGRP 238


>03_01_0141 +
           1116833-1117082,1117658-1118574,1119417-1119579,
           1119668-1120497,1120562-1120570
          Length = 722

 Score = 29.1 bits (62), Expect = 5.4
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -3

Query: 420 CDAELLPEAGNAGPGQAQPV 361
           C A LLPE GN G GQ+  V
Sbjct: 486 CSATLLPEEGNTGDGQSPKV 505


>01_01_0933 -
           7368672-7368785,7368860-7368895,7369581-7369715,
           7369825-7369989,7370060-7370140,7370316-7370391,
           7370479-7370612,7370706-7370798,7371860-7372188,
           7372290-7372350,7372407-7372778
          Length = 531

 Score = 29.1 bits (62), Expect = 5.4
 Identities = 17/46 (36%), Positives = 21/46 (45%)
 Frame = -2

Query: 622 SNXSXLMTFRXPPRSRDAPHXLXCXGSPXRRPAC*SWAGWEWRWAS 485
           SN S + T+R  P +  AP       +  RRP    W G   RWAS
Sbjct: 15  SNTS-VATYRRSPCTTPAPRMRSLSATTTRRPWRTGWRGRPMRWAS 59


>02_04_0470 - 23183925-23184743,23184929-23185153
          Length = 347

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 30/93 (32%), Positives = 36/93 (38%), Gaps = 6/93 (6%)
 Frame = -1

Query: 413 PSCSPKPGMRVPVRLSPCPFTLSRASPAEAAL-----SLWRSLKSADPMALSTFLSLPVR 249
           PS   +PGMRV  R SP     +RA P   +L     S W       P A ST  S   R
Sbjct: 159 PSLPAQPGMRVAHRWSPAK---ARALPPPPSLRYPSRSSWDGADLDGPTAASTTTSRRRR 215

Query: 248 GTFR-AAPEVPSEFTVKLPACLRARVGTCLPLA 153
              R   P   S  + +   C RA +   L  A
Sbjct: 216 RHHRLVPPPAASPLSNRQRHCCRAAIAGALESA 248


>02_02_0272 - 8452994-8453187,8453850-8454975
          Length = 439

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 18/44 (40%), Positives = 24/44 (54%)
 Frame = -1

Query: 377 VRLSPCPFTLSRASPAEAALSLWRSLKSADPMALSTFLSLPVRG 246
           +RL P P +L RA+   A  + WR L +ADP  L  F +   RG
Sbjct: 20  LRLPPRPSSLPRAA---AVCARWRRLVTADPAFLRRFRAHHRRG 60


>12_01_0831 -
           7688342-7688772,7690678-7692610,7693142-7693915,
           7694019-7694142,7696084-7696189,7696346-7696532
          Length = 1184

 Score = 28.3 bits (60), Expect = 9.4
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -1

Query: 380 PVRLSPCPFTLSRASPAEAA 321
           P+RLSP P ++SR  P+ AA
Sbjct: 153 PIRLSPSPRSMSRTRPSSAA 172


>07_03_0723 + 20954827-20954905,20954974-20956277
          Length = 460

 Score = 28.3 bits (60), Expect = 9.4
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -1

Query: 407 CSPKPGMRVPVR-LSPCPFTLSRASPAEAALSLWR 306
           CSP P  R+P+R  + C     +ASP   + + WR
Sbjct: 62  CSPAPSARIPLRGFTDCRL---KASPGSGSFTRWR 93


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,047,568
Number of Sequences: 37544
Number of extensions: 252476
Number of successful extensions: 823
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 823
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2729534420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)