Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP27_F_K22
(965 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CR456979-1|CAG33260.1| 68|Homo sapiens SEC61G protein. 99 2e-20
BC051840-1|AAH51840.1| 68|Homo sapiens Sec61 gamma subunit pro... 99 2e-20
BC009480-1|AAH09480.1| 68|Homo sapiens Sec61 gamma subunit pro... 99 2e-20
M84820-1|AAA60293.1| 533|Homo sapiens retinoid X receptor beta ... 32 2.7
X63522-1|CAA45087.1| 533|Homo sapiens retinoic acid X receptor ... 32 3.6
BT007280-1|AAP35944.1| 533|Homo sapiens retinoid X receptor, be... 32 3.6
BC040943-1|AAH40943.1| 498|Homo sapiens WAS protein family, mem... 32 3.6
BC001167-1|AAH01167.1| 533|Homo sapiens retinoid X receptor, be... 32 3.6
AL844527-9|CAI41836.2| 537|Homo sapiens retinoid X receptor, be... 32 3.6
AL844527-8|CAI41837.1| 533|Homo sapiens retinoid X receptor, be... 32 3.6
AL662824-21|CAI17612.2| 537|Homo sapiens retinoid X receptor, b... 32 3.6
AL662824-20|CAI17614.1| 533|Homo sapiens retinoid X receptor, b... 32 3.6
AL645940-7|CAI18064.2| 537|Homo sapiens retinoid X receptor, be... 32 3.6
AL645940-6|CAI18066.1| 533|Homo sapiens retinoid X receptor, be... 32 3.6
AL096774-6|CAC18518.1| 498|Homo sapiens WAS protein family, mem... 32 3.6
AL031228-14|CAI95622.1| 482|Homo sapiens retinoid X receptor, b... 32 3.6
AL031228-13|CAA20239.1| 533|Homo sapiens retinoid X receptor, b... 32 3.6
AF120161-1|AAD13794.1| 533|Homo sapiens retinoic X receptor bet... 32 3.6
AF065396-1|AAC18599.1| 533|Homo sapiens retinoic X receptor B p... 32 3.6
AB209244-1|BAD92481.1| 577|Homo sapiens retinoid X receptor, be... 32 3.6
AB026542-1|BAA81795.1| 498|Homo sapiens WASP-family protein pro... 32 3.6
>CR456979-1|CAG33260.1| 68|Homo sapiens SEC61G protein.
Length = 68
Score = 99.1 bits (236), Expect = 2e-20
Identities = 47/67 (70%), Positives = 52/67 (77%)
Frame = +2
Query: 155 MDQIAKFVEPGKQFAKDSIRLVRRCTKPDRKEFQKIAIATAXXXXXXXXXXXXVKLIHIP 334
MDQ+ +FVEP +QF KDSIRLV+RCTKPDRKEFQKIA+ATA VKLIHIP
Sbjct: 1 MDQVMQFVEPSRQFVKDSIRLVKRCTKPDRKEFQKIAMATAIGFAIMGFIGFFVKLIHIP 60
Query: 335 INNIIVG 355
INNIIVG
Sbjct: 61 INNIIVG 67
>BC051840-1|AAH51840.1| 68|Homo sapiens Sec61 gamma subunit
protein.
Length = 68
Score = 99.1 bits (236), Expect = 2e-20
Identities = 47/67 (70%), Positives = 52/67 (77%)
Frame = +2
Query: 155 MDQIAKFVEPGKQFAKDSIRLVRRCTKPDRKEFQKIAIATAXXXXXXXXXXXXVKLIHIP 334
MDQ+ +FVEP +QF KDSIRLV+RCTKPDRKEFQKIA+ATA VKLIHIP
Sbjct: 1 MDQVMQFVEPSRQFVKDSIRLVKRCTKPDRKEFQKIAMATAIGFAIMGFIGFFVKLIHIP 60
Query: 335 INNIIVG 355
INNIIVG
Sbjct: 61 INNIIVG 67
>BC009480-1|AAH09480.1| 68|Homo sapiens Sec61 gamma subunit
protein.
Length = 68
Score = 99.1 bits (236), Expect = 2e-20
Identities = 47/67 (70%), Positives = 52/67 (77%)
Frame = +2
Query: 155 MDQIAKFVEPGKQFAKDSIRLVRRCTKPDRKEFQKIAIATAXXXXXXXXXXXXVKLIHIP 334
MDQ+ +FVEP +QF KDSIRLV+RCTKPDRKEFQKIA+ATA VKLIHIP
Sbjct: 1 MDQVMQFVEPSRQFVKDSIRLVKRCTKPDRKEFQKIAMATAIGFAIMGFIGFFVKLIHIP 60
Query: 335 INNIIVG 355
INNIIVG
Sbjct: 61 INNIIVG 67
>M84820-1|AAA60293.1| 533|Homo sapiens retinoid X receptor beta
protein.
Length = 533
Score = 32.3 bits (70), Expect = 2.7
Identities = 19/60 (31%), Positives = 20/60 (33%)
Frame = +3
Query: 522 PSXQXPPXXXXPXXXXIPXPLXGXXXSPPPXXSPPXXXGXXXSPTPKTXXXXVXRGXPPP 701
P PP P P G +PPP PP G SP P G PPP
Sbjct: 92 PQGVPPPSPPGPPLPPSTAPTLGGSGAPPPPPMPPPPLG---SPFPVISSSMGSPGLPPP 148
>X63522-1|CAA45087.1| 533|Homo sapiens retinoic acid X receptor b
protein.
Length = 533
Score = 31.9 bits (69), Expect = 3.6
Identities = 19/60 (31%), Positives = 20/60 (33%)
Frame = +3
Query: 522 PSXQXPPXXXXPXXXXIPXPLXGXXXSPPPXXSPPXXXGXXXSPTPKTXXXXVXRGXPPP 701
P PP P P G +PPP PP G SP P G PPP
Sbjct: 92 PQGVPPPSPPGPPLPPSTAPSLGGSGAPPPPPMPPPPLG---SPFPVISSSMGSPGLPPP 148
>BT007280-1|AAP35944.1| 533|Homo sapiens retinoid X receptor, beta
protein.
Length = 533
Score = 31.9 bits (69), Expect = 3.6
Identities = 19/60 (31%), Positives = 20/60 (33%)
Frame = +3
Query: 522 PSXQXPPXXXXPXXXXIPXPLXGXXXSPPPXXSPPXXXGXXXSPTPKTXXXXVXRGXPPP 701
P PP P P G +PPP PP G SP P G PPP
Sbjct: 92 PQGVPPPSPPGPPLPPSTAPSLGGSGAPPPPPMPPPPLG---SPFPVISSSMGSPGLPPP 148
>BC040943-1|AAH40943.1| 498|Homo sapiens WAS protein family, member
2 protein.
Length = 498
Score = 31.9 bits (69), Expect = 3.6
Identities = 17/55 (30%), Positives = 20/55 (36%)
Frame = +2
Query: 788 PXXXXPXPPPPXLFXXLPHLXGGXXXXLSPXXKTPPHXPPXXXXXXXFXAPPPXA 952
P P PPPP + P G +P +PP PP PPP A
Sbjct: 318 PPPAPPPPPPPMIGIPPPPPPVGFGSPGTPPPPSPPSFPPHPDFAAPPPPPPPPA 372
>BC001167-1|AAH01167.1| 533|Homo sapiens retinoid X receptor, beta
protein.
Length = 533
Score = 31.9 bits (69), Expect = 3.6
Identities = 19/60 (31%), Positives = 20/60 (33%)
Frame = +3
Query: 522 PSXQXPPXXXXPXXXXIPXPLXGXXXSPPPXXSPPXXXGXXXSPTPKTXXXXVXRGXPPP 701
P PP P P G +PPP PP G SP P G PPP
Sbjct: 92 PQGVPPPSPPGPPLPPSTAPSLGGSGAPPPPPMPPPPLG---SPFPVISSSMGSPGLPPP 148
>AL844527-9|CAI41836.2| 537|Homo sapiens retinoid X receptor, beta
protein.
Length = 537
Score = 31.9 bits (69), Expect = 3.6
Identities = 19/60 (31%), Positives = 20/60 (33%)
Frame = +3
Query: 522 PSXQXPPXXXXPXXXXIPXPLXGXXXSPPPXXSPPXXXGXXXSPTPKTXXXXVXRGXPPP 701
P PP P P G +PPP PP G SP P G PPP
Sbjct: 92 PQGVPPPSPPGPPLPPSTAPSLGGSGAPPPPPMPPPPLG---SPFPVISSSMGSPGLPPP 148
>AL844527-8|CAI41837.1| 533|Homo sapiens retinoid X receptor, beta
protein.
Length = 533
Score = 31.9 bits (69), Expect = 3.6
Identities = 19/60 (31%), Positives = 20/60 (33%)
Frame = +3
Query: 522 PSXQXPPXXXXPXXXXIPXPLXGXXXSPPPXXSPPXXXGXXXSPTPKTXXXXVXRGXPPP 701
P PP P P G +PPP PP G SP P G PPP
Sbjct: 92 PQGVPPPSPPGPPLPPSTAPSLGGSGAPPPPPMPPPPLG---SPFPVISSSMGSPGLPPP 148
>AL662824-21|CAI17612.2| 537|Homo sapiens retinoid X receptor, beta
protein.
Length = 537
Score = 31.9 bits (69), Expect = 3.6
Identities = 19/60 (31%), Positives = 20/60 (33%)
Frame = +3
Query: 522 PSXQXPPXXXXPXXXXIPXPLXGXXXSPPPXXSPPXXXGXXXSPTPKTXXXXVXRGXPPP 701
P PP P P G +PPP PP G SP P G PPP
Sbjct: 92 PQGVPPPSPPGPPLPPSTAPSLGGSGAPPPPPMPPPPLG---SPFPVISSSMGSPGLPPP 148
>AL662824-20|CAI17614.1| 533|Homo sapiens retinoid X receptor, beta
protein.
Length = 533
Score = 31.9 bits (69), Expect = 3.6
Identities = 19/60 (31%), Positives = 20/60 (33%)
Frame = +3
Query: 522 PSXQXPPXXXXPXXXXIPXPLXGXXXSPPPXXSPPXXXGXXXSPTPKTXXXXVXRGXPPP 701
P PP P P G +PPP PP G SP P G PPP
Sbjct: 92 PQGVPPPSPPGPPLPPSTAPSLGGSGAPPPPPMPPPPLG---SPFPVISSSMGSPGLPPP 148
>AL645940-7|CAI18064.2| 537|Homo sapiens retinoid X receptor, beta
protein.
Length = 537
Score = 31.9 bits (69), Expect = 3.6
Identities = 19/60 (31%), Positives = 20/60 (33%)
Frame = +3
Query: 522 PSXQXPPXXXXPXXXXIPXPLXGXXXSPPPXXSPPXXXGXXXSPTPKTXXXXVXRGXPPP 701
P PP P P G +PPP PP G SP P G PPP
Sbjct: 92 PQGVPPPSPPGPPLPPSTAPSLGGSGAPPPPPMPPPPLG---SPFPVISSSMGSPGLPPP 148
>AL645940-6|CAI18066.1| 533|Homo sapiens retinoid X receptor, beta
protein.
Length = 533
Score = 31.9 bits (69), Expect = 3.6
Identities = 19/60 (31%), Positives = 20/60 (33%)
Frame = +3
Query: 522 PSXQXPPXXXXPXXXXIPXPLXGXXXSPPPXXSPPXXXGXXXSPTPKTXXXXVXRGXPPP 701
P PP P P G +PPP PP G SP P G PPP
Sbjct: 92 PQGVPPPSPPGPPLPPSTAPSLGGSGAPPPPPMPPPPLG---SPFPVISSSMGSPGLPPP 148
>AL096774-6|CAC18518.1| 498|Homo sapiens WAS protein family, member
2 protein.
Length = 498
Score = 31.9 bits (69), Expect = 3.6
Identities = 17/55 (30%), Positives = 20/55 (36%)
Frame = +2
Query: 788 PXXXXPXPPPPXLFXXLPHLXGGXXXXLSPXXKTPPHXPPXXXXXXXFXAPPPXA 952
P P PPPP + P G +P +PP PP PPP A
Sbjct: 318 PPPAPPPPPPPMIGIPPPPPPVGFGSPGTPPPPSPPSFPPHPDFAAPPPPPPPPA 372
>AL031228-14|CAI95622.1| 482|Homo sapiens retinoid X receptor, beta
protein.
Length = 482
Score = 31.9 bits (69), Expect = 3.6
Identities = 19/60 (31%), Positives = 20/60 (33%)
Frame = +3
Query: 522 PSXQXPPXXXXPXXXXIPXPLXGXXXSPPPXXSPPXXXGXXXSPTPKTXXXXVXRGXPPP 701
P PP P P G +PPP PP G SP P G PPP
Sbjct: 41 PQGVPPPSPPGPPLPPSTAPSLGGSGAPPPPPMPPPPLG---SPFPVISSSMGSPGLPPP 97
>AL031228-13|CAA20239.1| 533|Homo sapiens retinoid X receptor, beta
protein.
Length = 533
Score = 31.9 bits (69), Expect = 3.6
Identities = 19/60 (31%), Positives = 20/60 (33%)
Frame = +3
Query: 522 PSXQXPPXXXXPXXXXIPXPLXGXXXSPPPXXSPPXXXGXXXSPTPKTXXXXVXRGXPPP 701
P PP P P G +PPP PP G SP P G PPP
Sbjct: 92 PQGVPPPSPPGPPLPPSTAPSLGGSGAPPPPPMPPPPLG---SPFPVISSSMGSPGLPPP 148
>AF120161-1|AAD13794.1| 533|Homo sapiens retinoic X receptor beta
protein.
Length = 533
Score = 31.9 bits (69), Expect = 3.6
Identities = 19/60 (31%), Positives = 20/60 (33%)
Frame = +3
Query: 522 PSXQXPPXXXXPXXXXIPXPLXGXXXSPPPXXSPPXXXGXXXSPTPKTXXXXVXRGXPPP 701
P PP P P G +PPP PP G SP P G PPP
Sbjct: 92 PQGVPPPSPPGPPLPPSTAPSLGGSGAPPPPPMPPPPLG---SPFPVISSSMGSPGLPPP 148
>AF065396-1|AAC18599.1| 533|Homo sapiens retinoic X receptor B
protein.
Length = 533
Score = 31.9 bits (69), Expect = 3.6
Identities = 19/60 (31%), Positives = 20/60 (33%)
Frame = +3
Query: 522 PSXQXPPXXXXPXXXXIPXPLXGXXXSPPPXXSPPXXXGXXXSPTPKTXXXXVXRGXPPP 701
P PP P P G +PPP PP G SP P G PPP
Sbjct: 92 PQGVPPPSPPGPPLPPSTAPSLGGSGAPPPPPMPPPPLG---SPFPVISSSMGSPGLPPP 148
>AB209244-1|BAD92481.1| 577|Homo sapiens retinoid X receptor, beta
variant protein.
Length = 577
Score = 31.9 bits (69), Expect = 3.6
Identities = 19/60 (31%), Positives = 20/60 (33%)
Frame = +3
Query: 522 PSXQXPPXXXXPXXXXIPXPLXGXXXSPPPXXSPPXXXGXXXSPTPKTXXXXVXRGXPPP 701
P PP P P G +PPP PP G SP P G PPP
Sbjct: 132 PQGVPPPSPPGPPLPPSTAPSLGGSGAPPPPPMPPPPLG---SPFPVISSSMGSPGLPPP 188
>AB026542-1|BAA81795.1| 498|Homo sapiens WASP-family protein
protein.
Length = 498
Score = 31.9 bits (69), Expect = 3.6
Identities = 17/55 (30%), Positives = 20/55 (36%)
Frame = +2
Query: 788 PXXXXPXPPPPXLFXXLPHLXGGXXXXLSPXXKTPPHXPPXXXXXXXFXAPPPXA 952
P P PPPP + P G +P +PP PP PPP A
Sbjct: 318 PPPAPPPPPPPMIGIPPPPPPVGFGSPGTPPPPSPPSFPPHPDFAAPPPPPPPPA 372
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,804,527
Number of Sequences: 237096
Number of extensions: 1941045
Number of successful extensions: 4431
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 2925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4009
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12825217482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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