Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP27_F_K22
(965 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z74031-7|CAA98458.1| 68|Caenorhabditis elegans Hypothetical pr... 92 6e-19
U53785-1|AAC47274.1| 68|Caenorhabditis elegans Sec61p gamma ho... 92 6e-19
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 32 0.53
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 32 0.53
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 32 0.53
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 30 2.1
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 30 2.1
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 30 2.1
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 6.5
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 6.5
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 6.5
Z79596-1|CAB01857.1| 830|Caenorhabditis elegans Hypothetical pr... 28 8.7
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 28 8.7
L29031-1|AAB72228.2| 830|Caenorhabditis elegans dynamin protein. 28 8.7
>Z74031-7|CAA98458.1| 68|Caenorhabditis elegans Hypothetical
protein F32D8.6 protein.
Length = 68
Score = 91.9 bits (218), Expect = 6e-19
Identities = 43/68 (63%), Positives = 50/68 (73%)
Frame = +2
Query: 155 MDQIAKFVEPGKQFAKDSIRLVRRCTKPDRKEFQKIAIATAXXXXXXXXXXXXVKLIHIP 334
MDQ +EP +QF+KDS RLV+RCTKPDRKE+QKIA+ATA VKLIHIP
Sbjct: 1 MDQFQALIEPARQFSKDSYRLVKRCTKPDRKEYQKIAMATAIGFAIMGFIGFFVKLIHIP 60
Query: 335 INNIIVGS 358
INNIIVG+
Sbjct: 61 INNIIVGA 68
>U53785-1|AAC47274.1| 68|Caenorhabditis elegans Sec61p gamma
homolog protein.
Length = 68
Score = 91.9 bits (218), Expect = 6e-19
Identities = 43/68 (63%), Positives = 50/68 (73%)
Frame = +2
Query: 155 MDQIAKFVEPGKQFAKDSIRLVRRCTKPDRKEFQKIAIATAXXXXXXXXXXXXVKLIHIP 334
MDQ +EP +QF+KDS RLV+RCTKPDRKE+QKIA+ATA VKLIHIP
Sbjct: 1 MDQFQALIEPARQFSKDSYRLVKRCTKPDRKEYQKIAMATAIGFAIMGFIGFFVKLIHIP 60
Query: 335 INNIIVGS 358
INNIIVG+
Sbjct: 61 INNIIVGA 68
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 32.3 bits (70), Expect = 0.53
Identities = 17/59 (28%), Positives = 19/59 (32%)
Frame = +3
Query: 525 SXQXPPXXXXPXXXXIPXPLXGXXXSPPPXXSPPXXXGXXXSPTPKTXXXXVXRGXPPP 701
S PP P P+ G PPP P G P P + G PPP
Sbjct: 703 SSALPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPP 761
Score = 31.9 bits (69), Expect = 0.70
Identities = 17/50 (34%), Positives = 18/50 (36%)
Frame = +2
Query: 809 PPPPXLFXXLPHLXGGXXXXLSPXXKTPPHXPPXXXXXXXFXAPPPXALG 958
PPPP LP + GG P PP PP PPP G
Sbjct: 742 PPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPG 791
Score = 29.1 bits (62), Expect = 5.0
Identities = 18/60 (30%), Positives = 18/60 (30%)
Frame = +3
Query: 522 PSXQXPPXXXXPXXXXIPXPLXGXXXSPPPXXSPPXXXGXXXSPTPKTXXXXVXRGXPPP 701
P PP P P L PPP PP G P P G PPP
Sbjct: 731 PPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPP---GGCPPPPPPPPPGGFKGGPPPP 787
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 32.3 bits (70), Expect = 0.53
Identities = 17/59 (28%), Positives = 19/59 (32%)
Frame = +3
Query: 525 SXQXPPXXXXPXXXXIPXPLXGXXXSPPPXXSPPXXXGXXXSPTPKTXXXXVXRGXPPP 701
S PP P P+ G PPP P G P P + G PPP
Sbjct: 703 SSALPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPP 761
Score = 31.9 bits (69), Expect = 0.70
Identities = 17/50 (34%), Positives = 18/50 (36%)
Frame = +2
Query: 809 PPPPXLFXXLPHLXGGXXXXLSPXXKTPPHXPPXXXXXXXFXAPPPXALG 958
PPPP LP + GG P PP PP PPP G
Sbjct: 742 PPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPG 791
Score = 29.1 bits (62), Expect = 5.0
Identities = 18/60 (30%), Positives = 18/60 (30%)
Frame = +3
Query: 522 PSXQXPPXXXXPXXXXIPXPLXGXXXSPPPXXSPPXXXGXXXSPTPKTXXXXVXRGXPPP 701
P PP P P L PPP PP G P P G PPP
Sbjct: 731 PPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPP---GGCPPPPPPPPPGGFKGGPPPP 787
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 32.3 bits (70), Expect = 0.53
Identities = 17/59 (28%), Positives = 19/59 (32%)
Frame = +3
Query: 525 SXQXPPXXXXPXXXXIPXPLXGXXXSPPPXXSPPXXXGXXXSPTPKTXXXXVXRGXPPP 701
S PP P P+ G PPP P G P P + G PPP
Sbjct: 286 SSALPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPP 344
Score = 31.9 bits (69), Expect = 0.70
Identities = 17/50 (34%), Positives = 18/50 (36%)
Frame = +2
Query: 809 PPPPXLFXXLPHLXGGXXXXLSPXXKTPPHXPPXXXXXXXFXAPPPXALG 958
PPPP LP + GG P PP PP PPP G
Sbjct: 325 PPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPG 374
Score = 29.1 bits (62), Expect = 5.0
Identities = 18/60 (30%), Positives = 18/60 (30%)
Frame = +3
Query: 522 PSXQXPPXXXXPXXXXIPXPLXGXXXSPPPXXSPPXXXGXXXSPTPKTXXXXVXRGXPPP 701
P PP P P L PPP PP G P P G PPP
Sbjct: 314 PPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPP---GGCPPPPPPPPPGGFKGGPPPP 370
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 30.3 bits (65), Expect = 2.1
Identities = 18/61 (29%), Positives = 19/61 (31%)
Frame = +3
Query: 537 PPXXXXPXXXXIPXPLXGXXXSPPPXXSPPXXXGXXXSPTPKTXXXXVXRGXPPPKTXXY 716
PP P P + G PPP P G P P G PPP Y
Sbjct: 298 PPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPP--GMRYPGGMPPPPPPRY 355
Query: 717 P 719
P
Sbjct: 356 P 356
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 30.3 bits (65), Expect = 2.1
Identities = 16/57 (28%), Positives = 19/57 (33%)
Frame = +3
Query: 456 LYCIIS*XNKLFGSCTKXXXNXPSXQXPPXXXXPXXXXIPXPLXGXXXSPPPXXSPP 626
L+ II + FG C PP P P P+ PPP PP
Sbjct: 8 LFSIIPIASSTFGGCCSMGPPPCPPPPPPMCAPPPLPCPPPPICPPQFCPPPPMCPP 64
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 30.3 bits (65), Expect = 2.1
Identities = 18/61 (29%), Positives = 19/61 (31%)
Frame = +3
Query: 537 PPXXXXPXXXXIPXPLXGXXXSPPPXXSPPXXXGXXXSPTPKTXXXXVXRGXPPPKTXXY 716
PP P P + G PPP P G P P G PPP Y
Sbjct: 308 PPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPP--GMRYPGGMPPPPPPRY 365
Query: 717 P 719
P
Sbjct: 366 P 366
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 28.7 bits (61), Expect = 6.5
Identities = 18/66 (27%), Positives = 20/66 (30%)
Frame = +3
Query: 522 PSXQXPPXXXXPXXXXIPXPLXGXXXSPPPXXSPPXXXGXXXSPTPKTXXXXVXRGXPPP 701
P+ PP P P P G PP SPP P P PPP
Sbjct: 259 PAAGSPPP---PRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPP 315
Query: 702 KTXXYP 719
+ P
Sbjct: 316 QAGGSP 321
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 28.7 bits (61), Expect = 6.5
Identities = 18/66 (27%), Positives = 20/66 (30%)
Frame = +3
Query: 522 PSXQXPPXXXXPXXXXIPXPLXGXXXSPPPXXSPPXXXGXXXSPTPKTXXXXVXRGXPPP 701
P+ PP P P P G PP SPP P P PPP
Sbjct: 280 PAAGSPPP---PRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPP 336
Query: 702 KTXXYP 719
+ P
Sbjct: 337 QAGGSP 342
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 28.7 bits (61), Expect = 6.5
Identities = 18/66 (27%), Positives = 20/66 (30%)
Frame = +3
Query: 522 PSXQXPPXXXXPXXXXIPXPLXGXXXSPPPXXSPPXXXGXXXSPTPKTXXXXVXRGXPPP 701
P+ PP P P P G PP SPP P P PPP
Sbjct: 265 PAAGSPPP---PRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPP 321
Query: 702 KTXXYP 719
+ P
Sbjct: 322 QAGGSP 327
>Z79596-1|CAB01857.1| 830|Caenorhabditis elegans Hypothetical
protein C02C6.1a protein.
Length = 830
Score = 28.3 bits (60), Expect = 8.7
Identities = 18/62 (29%), Positives = 19/62 (30%), Gaps = 2/62 (3%)
Frame = +3
Query: 522 PSXQXPPXXXXPXXXXIPXPLXGXXXSPPP--XXSPPXXXGXXXSPTPKTXXXXVXRGXP 695
PS P P P P G +PPP PP G P G P
Sbjct: 763 PSPVPRPAPAPPGGRQAPMPPRGGPGAPPPPGMRPPPGAPGGGGGMYPPLIPTRPGPGGP 822
Query: 696 PP 701
PP
Sbjct: 823 PP 824
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 28.3 bits (60), Expect = 8.7
Identities = 21/84 (25%), Positives = 27/84 (32%), Gaps = 2/84 (2%)
Frame = +3
Query: 570 IPXPLXGXXXSPPPXXSPPXXXGXXXSPTPKTXXXXVXRGXPPPKT--XXYPXXSFXAXX 743
+P P G + PP PP S P V R PPP++ P + +
Sbjct: 110 VPAPQHGDHEASPPPPPPPRKSRAGGSSPPPPPPPRVPR-TPPPRSPPPRRPPMTPPSPQ 168
Query: 744 SRXXXXRXXXXPXXPPXXQXXPXP 815
R P PP P P
Sbjct: 169 RRPPRTPPSPEPRNPPRTPPSPIP 192
>L29031-1|AAB72228.2| 830|Caenorhabditis elegans dynamin protein.
Length = 830
Score = 28.3 bits (60), Expect = 8.7
Identities = 18/62 (29%), Positives = 19/62 (30%), Gaps = 2/62 (3%)
Frame = +3
Query: 522 PSXQXPPXXXXPXXXXIPXPLXGXXXSPPP--XXSPPXXXGXXXSPTPKTXXXXVXRGXP 695
PS P P P P G +PPP PP G P G P
Sbjct: 763 PSPVPRPAPAPPGGRQAPMPPRGGPGAPPPPGMRPPPGAPGGGGGMYPPLIPTRPGPGGP 822
Query: 696 PP 701
PP
Sbjct: 823 PP 824
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,592,638
Number of Sequences: 27780
Number of extensions: 274381
Number of successful extensions: 672
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2500474882
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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