Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_K21
         (967 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    35   0.015
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    31   0.18 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    31   0.32 
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    29   0.74 
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    29   0.74 
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    29   0.74 
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    23   1.5  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    25   2.8  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    27   3.0  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    27   5.2  
SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr 2|...    26   6.9  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 35.1 bits (77), Expect = 0.015
 Identities = 16/51 (31%), Positives = 16/51 (31%)
 Frame = -3

Query: 887 PPPPPPXXXXXXXXXXXXXXXPPPPXXXXXXXXXXXXXXXXXXXPPPPPPP 735
           PPPPPP               PP P                   PPPPPPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782



 Score = 31.5 bits (68), Expect = 0.18
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = -1

Query: 757 PPPPPPPPXXXXGXXKXXPPP 695
           PPPPPPPP          PPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPP 781



 Score = 30.7 bits (66), Expect = 0.32
 Identities = 21/72 (29%), Positives = 22/72 (30%), Gaps = 6/72 (8%)
 Frame = -3

Query: 896 PPPPPP------PPPXXXXXXXXXXXXXXXPPPPXXXXXXXXXXXXXXXXXXXPPPPPPP 735
           PPPPPP      P P               PPPP                   PPPPPPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPP--------PPPGVAGAGPPPPPPPPP 783

Query: 734 XXXXGXXKXXXP 699
               G  +   P
Sbjct: 784 AVSAGGSRYYAP 795



 Score = 30.3 bits (65), Expect = 0.42
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = -1

Query: 757 PPPPPPPPXXXXGXXKXXPPP 695
           PPPPPPP     G     PPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPP 782



 Score = 29.1 bits (62), Expect = 0.98
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -1

Query: 757 PPPPPPPPXXXXGXXKXXPP 698
           PPPPPPPP    G  +   P
Sbjct: 776 PPPPPPPPAVSAGGSRYYAP 795



 Score = 27.1 bits (57), Expect = 4.0
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = -1

Query: 757 PPPPPPPPXXXXGXXKXXPPP 695
           PPPPPPP     G     P P
Sbjct: 777 PPPPPPPAVSAGGSRYYAPAP 797


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 31.5 bits (68), Expect = 0.18
 Identities = 17/56 (30%), Positives = 17/56 (30%), Gaps = 2/56 (3%)
 Frame = -3

Query: 896 PPPPPPPP--PXXXXXXXXXXXXXXXPPPPXXXXXXXXXXXXXXXXXXXPPPPPPP 735
           PPPPPPP                   PPPP                    PPPPPP
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366



 Score = 28.3 bits (60), Expect = 1.7
 Identities = 16/54 (29%), Positives = 16/54 (29%), Gaps = 3/54 (5%)
 Frame = -3

Query: 887 PPPPPP---XXXXXXXXXXXXXXXPPPPXXXXXXXXXXXXXXXXXXXPPPPPPP 735
           PP PPP                  PPPP                   PPPPPPP
Sbjct: 290 PPLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPP 343



 Score = 27.9 bits (59), Expect = 2.3
 Identities = 13/42 (30%), Positives = 13/42 (30%)
 Frame = -1

Query: 823 PPPPXXXXXXXXXXXXXXXXXXPPPPPPPPXXXXGXXKXXPP 698
           PPPP                   PPPPPPP          PP
Sbjct: 314 PPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPP 355



 Score = 27.5 bits (58), Expect = 3.0
 Identities = 12/42 (28%), Positives = 13/42 (30%)
 Frame = -1

Query: 823 PPPPXXXXXXXXXXXXXXXXXXPPPPPPPPXXXXGXXKXXPP 698
           PPPP                    PPPPPP       +  PP
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPP 378


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 30.7 bits (66), Expect = 0.32
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = -1

Query: 757 PPPPPPPPXXXXGXXKXXPPP 695
           PPPPPPPP          PPP
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPP 29



 Score = 27.9 bits (59), Expect = 2.3
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = -1

Query: 757 PPPPPPPPXXXXGXXKXXPPP 695
           PPPPPPP           PPP
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPP 30



 Score = 26.6 bits (56), Expect(2) = 0.59
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -3

Query: 896 PPPPPPPP 873
           PPPPPPPP
Sbjct: 9   PPPPPPPP 16



 Score = 26.6 bits (56), Expect = 5.2
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -3

Query: 893 PPPPPPPP 870
           PPPPPPPP
Sbjct: 9   PPPPPPPP 16



 Score = 21.4 bits (43), Expect(2) = 0.59
 Identities = 8/18 (44%), Positives = 8/18 (44%)
 Frame = -3

Query: 752 PPPPPPXXXXGXXKXXXP 699
           PPPPPP       K   P
Sbjct: 24  PPPPPPPGYVKKRKNKTP 41


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 29.5 bits (63), Expect = 0.74
 Identities = 9/9 (100%), Positives = 9/9 (100%)
 Frame = -3

Query: 896 PPPPPPPPP 870
           PPPPPPPPP
Sbjct: 306 PPPPPPPPP 314



 Score = 27.9 bits (59), Expect = 2.3
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = -1

Query: 757 PPPPPPPPXXXXGXXKXXPPP 695
           PPPPPPPP          P P
Sbjct: 307 PPPPPPPPSNDFWKDSNEPAP 327



 Score = 26.6 bits (56), Expect = 5.2
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -1

Query: 757 PPPPPPPP 734
           PPPPPPPP
Sbjct: 306 PPPPPPPP 313


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 29.5 bits (63), Expect = 0.74
 Identities = 9/9 (100%), Positives = 9/9 (100%)
 Frame = -3

Query: 896 PPPPPPPPP 870
           PPPPPPPPP
Sbjct: 189 PPPPPPPPP 197



 Score = 27.5 bits (58), Expect = 3.0
 Identities = 11/30 (36%), Positives = 11/30 (36%)
 Frame = -1

Query: 823 PPPPXXXXXXXXXXXXXXXXXXPPPPPPPP 734
           PPP                   PPPPPPPP
Sbjct: 167 PPPSFQPPSAAAPATSLPSDYNPPPPPPPP 196



 Score = 26.6 bits (56), Expect = 5.2
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -1

Query: 757 PPPPPPPP 734
           PPPPPPPP
Sbjct: 190 PPPPPPPP 197



 Score = 26.2 bits (55), Expect = 6.9
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -3

Query: 896 PPPPPPPPP 870
           P PPPPPPP
Sbjct: 236 PAPPPPPPP 244


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 29.5 bits (63), Expect = 0.74
 Identities = 9/9 (100%), Positives = 9/9 (100%)
 Frame = -3

Query: 896 PPPPPPPPP 870
           PPPPPPPPP
Sbjct: 945 PPPPPPPPP 953



 Score = 27.9 bits (59), Expect = 2.3
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = -1

Query: 757  PPPPPPPPXXXXGXXKXXPP 698
            PPPPPPPP       K   P
Sbjct: 946  PPPPPPPPLVSAAGGKFVSP 965



 Score = 26.6 bits (56), Expect = 5.2
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -1

Query: 757 PPPPPPPP 734
           PPPPPPPP
Sbjct: 945 PPPPPPPP 952


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 23.4 bits (48), Expect(2) = 1.5
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -3

Query: 896 PPPPPPPP 873
           P PPPPPP
Sbjct: 3   PAPPPPPP 10



 Score = 23.4 bits (48), Expect(2) = 1.5
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -3

Query: 893 PPPPPPPP 870
           PPPPPP P
Sbjct: 5   PPPPPPAP 12


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.0 bits (52), Expect(2) = 2.8
 Identities = 9/20 (45%), Positives = 9/20 (45%)
 Frame = -1

Query: 754  PPPPPPPXXXXGXXKXXPPP 695
            PPPP  P    G     PPP
Sbjct: 1715 PPPPSAPPMPAGPPSAPPPP 1734



 Score = 20.6 bits (41), Expect(2) = 2.8
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = -1

Query: 757  PPPPPPP 737
            P PPPPP
Sbjct: 1705 PTPPPPP 1711


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = -1

Query: 757 PPPPPPPPXXXXGXXKXXP 701
           PPPPPPPP       K  P
Sbjct: 370 PPPPPPPPELLNHSPKSRP 388



 Score = 26.6 bits (56), Expect = 5.2
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -3

Query: 896 PPPPPPPP 873
           PPPPPPPP
Sbjct: 370 PPPPPPPP 377



 Score = 26.6 bits (56), Expect = 5.2
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -3

Query: 893 PPPPPPPP 870
           PPPPPPPP
Sbjct: 370 PPPPPPPP 377


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -3

Query: 896  PPPPPPPP 873
            PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102



 Score = 26.6 bits (56), Expect = 5.2
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -3

Query: 893  PPPPPPPP 870
            PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102



 Score = 26.6 bits (56), Expect = 5.2
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -1

Query: 757  PPPPPPPP 734
            PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102


>SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 554

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 58  FKEIF*ILPGPGAQFPLTXFXPGSRKXP 141
           FKE F +LPG G  F    + PG+R+ P
Sbjct: 139 FKESFALLPGGGNHF---AYEPGTRENP 163


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,574,504
Number of Sequences: 5004
Number of extensions: 23974
Number of successful extensions: 405
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 495302128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)