Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_K20
         (896 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.04 |rps1201|rps12-1, rps12|40S ribosomal protein S12|Sch...    27   2.7  
SPBC1685.02c |rps1202|rps12-2|40S ribosomal protein S12|Schizosa...    27   4.8  
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p...    26   8.4  

>SPCC962.04 |rps1201|rps12-1, rps12|40S ribosomal protein
           S12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 145

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 1/78 (1%)
 Frame = +3

Query: 105 MIRYIDEFGQTTTRMQ*KKCFICEICDAIALFVTIISCNKQVNNNNCIHFMF-QVQGEVW 281
           + R I E  +   R Q   C +CE CD  A +V ++      +    I     +V GE W
Sbjct: 46  LARGIREASKALDRRQAHLCVLCESCDQEA-YVKLVEALCAESETPLIKVADPKVLGE-W 103

Query: 282 EGFFCINESANARGEAVC 335
            G   ++   NAR    C
Sbjct: 104 AGLCVLDRDGNARKVVGC 121


>SPBC1685.02c |rps1202|rps12-2|40S ribosomal protein
           S12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 148

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 1/78 (1%)
 Frame = +3

Query: 105 MIRYIDEFGQTTTRMQ*KKCFICEICDAIALFVTIISCNKQVNNNNCIHFMF-QVQGEVW 281
           + R I E  +   R Q   C +CE CD  A +V ++      +    +     ++ GE W
Sbjct: 49  LARGIREASKALDRRQAHLCVLCESCDQEA-YVKLVEALCAESQTPLVKVADPKILGE-W 106

Query: 282 EGFFCINESANARGEAVC 335
            G   ++   NAR    C
Sbjct: 107 AGLCVLDRDGNARKVVGC 124


>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 275

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = -1

Query: 716 RHASRREKGGQV---SGKRQXRNRRAHEGASR 630
           +   RRE+GG+V   SG+ + R+   HE  SR
Sbjct: 95  KRGGRRERGGRVHGDSGRLRSRSPSPHEARSR 126


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,193,497
Number of Sequences: 5004
Number of extensions: 60731
Number of successful extensions: 149
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)