Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_K18
         (953 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.55 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    29   0.97 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    28   1.7  
SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces pom...    27   2.9  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.9 bits (64), Expect = 0.55
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = -3

Query: 945 GGXPPPPXKXXXXXXXKPPPPP 880
           GG PPPP          PPPPP
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPP 780



 Score = 29.1 bits (62), Expect = 0.97
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = -1

Query: 935 PPPPXKXPXXXXKNPPPPP 879
           PPPP   P      PPPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPP 779



 Score = 28.3 bits (60), Expect = 1.7
 Identities = 14/36 (38%), Positives = 14/36 (38%)
 Frame = -2

Query: 592 PPPXXXXPPPPPPXXGXXXFXXXKXXXAPKXXPPPP 485
           P P    PPPPPP  G            P   PPPP
Sbjct: 754 PAPIMGGPPPPPPPPGV-------AGAGPPPPPPPP 782



 Score = 27.9 bits (59), Expect = 2.2
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = -1

Query: 950 GGGXXPPPPXKXPXXXXKNPPPPP 879
           GG   PPPP          PPPPP
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPP 782


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 29.1 bits (62), Expect = 0.97
 Identities = 16/49 (32%), Positives = 16/49 (32%)
 Frame = +3

Query: 474 PPPXGGGGXFXGAXXXXXXQKXXXPXXGGGGGGXSXXGGGFXFSPNXXG 620
           PPP  GG    G               GGG GG     GGF   P   G
Sbjct: 200 PPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFG 248


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -3

Query: 945 GGXPPPPXKXXXXXXXKPPPPP 880
           G  PPPP         +PPPPP
Sbjct: 7   GNPPPPPPPPGFEPPSQPPPPP 28



 Score = 27.9 bits (59), Expect = 2.2
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = -1

Query: 950 GGGXXPPPPXKXPXXXXKNPPPPPG 876
           G    PPPP          PPPPPG
Sbjct: 7   GNPPPPPPPPGFEPPSQPPPPPPPG 31


>SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +3

Query: 546 PXXGGGGGGXSXXGGGFXFSP 608
           P   GGG G    GGGF F P
Sbjct: 80  PGGPGGGPGEGFPGGGFGFDP 100


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,209,900
Number of Sequences: 5004
Number of extensions: 33006
Number of successful extensions: 181
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 487313384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)