Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_K16
         (890 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe...    61   2e-10
SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyce...    42   2e-04
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po...    33   0.055
SPAPB1A10.11c |||glutamyl-tRNA synthetase, mitochondrial|Schizos...    31   0.29 
SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces pom...    29   0.89 
SPCC4F11.04c |||mannosyltransferase complex subunit |Schizosacch...    28   2.1  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    27   2.7  
SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase |S...    27   2.7  
SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces po...    27   3.6  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    26   6.3  
SPBC365.07c |||TATA element modulatory factor homolog |Schizosac...    26   6.3  
SPBC1778.09 |||GTPase activating protein |Schizosaccharomyces po...    26   8.3  

>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 716

 Score = 60.9 bits (141), Expect = 2e-10
 Identities = 25/40 (62%), Positives = 31/40 (77%)
 Frame = +1

Query: 736 NGKSCCKIXPEASGYLHIGHAKAALLNQYYQQAFHGKLVM 855
           +GK   +  PE SGYLHIGHAKAALLNQY+   +HGKL++
Sbjct: 204 DGKVVTRFPPEPSGYLHIGHAKAALLNQYFANKYHGKLIV 243


>SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 41.5 bits (93), Expect = 2e-04
 Identities = 24/98 (24%), Positives = 45/98 (45%)
 Frame = +2

Query: 383 SLILEDEIPKSVEYLDKTLGPLTYLVGETLSVSDFAVFSVLYVSSKFKEISKLIPSQNIR 562
           S  L  E   +++Y+D  L    Y  GE  + +D  +   ++ + +     K  P +NI+
Sbjct: 137 SKYLSKETFLNLDYIDNHLASNEYFAGEQFTAADPQMCFPIFAAQRDYLSQK--PYKNIK 194

Query: 563 RWMKLVEAQPQVQTVIKALPSDALDKLTKVSSRKSPPT 676
           RWM++V  +P  +   + +  + L   + V     PPT
Sbjct: 195 RWMRVVSDRPACRIAAEKVEDNTLTLFSDVERYSHPPT 232


>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 811

 Score = 33.1 bits (72), Expect = 0.055
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +1

Query: 754 KIXPEASGYLHIGHAKAALLNQYYQQAFHG 843
           +  PE +GYLHIGH+KA  +N  + +  +G
Sbjct: 266 RFPPEPNGYLHIGHSKAIAVNFGFARYHNG 295


>SPAPB1A10.11c |||glutamyl-tRNA synthetase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 30.7 bits (66), Expect = 0.29
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = +1

Query: 754 KIXPEASGYLHIGHAKAALLNQYYQQAFHGKLVMXI 861
           +  P  +G+LH+G  + AL N  + +  +GK ++ +
Sbjct: 37  RFAPSPTGFLHLGSLRTALFNYLWAKKSNGKFILRL 72


>SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 409

 Score = 29.1 bits (62), Expect = 0.89
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +2

Query: 206 SSAKEIDIVWENESVIILPNSTKPVPFGTSND 301
           S A+  D  W ++ ++I PNS++   +G +ND
Sbjct: 195 SEAETRDFNWLSKGIVIFPNSSECAFYGNNND 226


>SPCC4F11.04c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = +2

Query: 281 PFGTSNDLIRILENA--FNKSVSPLEKVTMNHWLSFSLILEDEIPKSVEYL 427
           P G SND++  + +   F   +  LEK   ++WL +  I+    P S+ +L
Sbjct: 189 PVGVSNDVMGSVPHHPYFELIIQNLEKNAKSYWLPYLTIMLSTGPLSISFL 239


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
           Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
 Frame = -3

Query: 390 IRLKDNQ*FIVTFSSGLTDLLK-AFSRILI 304
           +RL D+Q F+  +SS  +DLLK   SRIL+
Sbjct: 413 LRLPDSQTFVQLYSSTESDLLKEGLSRILL 442


>SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 678

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 16/58 (27%), Positives = 28/58 (48%)
 Frame = +2

Query: 482 DFAVFSVLYVSSKFKEISKLIPSQNIRRWMKLVEAQPQVQTVIKALPSDALDKLTKVS 655
           D A   + Y +  +  I  + PSQ +   ++++  + +  TVI   P D LDK   +S
Sbjct: 293 DIADSGMRYQTGDYASICPMNPSQAVDDLLEVLGLKEKRDTVIIVKPIDTLDKAPVLS 350


>SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 427

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 13/48 (27%), Positives = 21/48 (43%)
 Frame = +2

Query: 596 VQTVIKALPSDALDKLTKVSSRKSPPTNAESGGRXQEGKFIELPYAEM 739
           +Q V   +P+D L  ++K+S    P  ++           IE PY  M
Sbjct: 327 LQHVSDGIPTDLLSLVSKISLPPVPSNSSSQRSNVSLNSLIECPYKSM 374


>SPAC18G6.05c |||translation elongation regulator Gcn1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 26/107 (24%), Positives = 50/107 (46%), Gaps = 3/107 (2%)
 Frame = +2

Query: 386  LILEDEIPKSVEYLDKTLGPLTYLVGE--TLSVSDFAVFSVLYVSSKFKEISKLIPSQNI 559
            ++L+ E  K   ++ +  GPL  ++GE   + V    ++++  + SK     +    Q  
Sbjct: 2270 IVLKTEPSKLRPFVTQITGPLIRIIGERFPVEVKCAILYTLNIILSKISTFLRPFLPQLQ 2329

Query: 560  RRWMKLVEAQPQVQTVIKALPSDALDKLTKVSSRKSP-PTNAESGGR 697
            R + K +   P  + VI++  + AL  L  + +R +P  T   SG R
Sbjct: 2330 RTFAKCL-GDPSSE-VIRSRAATALGTLITLQTRLAPIITELVSGAR 2374


>SPBC365.07c |||TATA element modulatory factor homolog
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -3

Query: 501 TLKTAKSDTDRVSPTK*VSGPSVLSK 424
           TLK  K D D  +PT  +  PS +SK
Sbjct: 289 TLKVTKEDEDPTTPTNAIPIPSSMSK 314


>SPBC1778.09 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 414

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = -3

Query: 390 IRLKDNQ*FIVTFSSGLTDLLKAFSRILIKSLLVPNGTGLVEFG 259
           + L +N+     FSSG   LLKAF  +  +     +G  L E G
Sbjct: 265 VNLLENRGMGDLFSSGFDTLLKAFDMLKHELSFTQSGRHLAEIG 308


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,491,278
Number of Sequences: 5004
Number of extensions: 72903
Number of successful extensions: 199
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)