Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_K13
         (901 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2 alpha-1,...    68   2e-12
SPBC725.03 |||conserved fungal protein|Schizosaccharomyces pombe...    28   2.1  

>SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2
           alpha-1,3-glucosyltransferase Alg12 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 546

 Score = 68.1 bits (159), Expect = 2e-12
 Identities = 31/49 (63%), Positives = 39/49 (79%)
 Frame = +2

Query: 191 PFTKVEESFNIQAVHDILYHRHNLSEYDHNEFPGVVPRTFIGPLIISML 337
           PFTKVEESF +QA+HDI  +R +LS+YDH EFPG V R+FI  L I++L
Sbjct: 28  PFTKVEESFAMQAIHDIQTYRWDLSKYDHLEFPGAVKRSFIPSLFIAVL 76


>SPBC725.03 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 257

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -3

Query: 470 MSVMWKNSMVXV*TRNLQSDNXLPAYWTQILLTPEGNK 357
           MS+ WKN ++ +   N+ S   +   + Q+   P GN+
Sbjct: 1   MSLAWKNELLKLLKENVDSSGVIHPEYFQLATLPTGNE 38


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,179,926
Number of Sequences: 5004
Number of extensions: 57830
Number of successful extensions: 100
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)