Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_K13
         (901 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53155-3|AAC48267.3|  492|Caenorhabditis elegans Hypothetical pr...    90   2e-18
AF068721-4|AAC19260.1|  298|Caenorhabditis elegans Hypothetical ...    32   0.64 
AL031630-12|CAA20991.1|  375|Caenorhabditis elegans Hypothetical...    30   2.6  
AL132877-8|CAD91705.1|  339|Caenorhabditis elegans Hypothetical ...    29   6.0  
AL132877-7|CAC70108.1|  686|Caenorhabditis elegans Hypothetical ...    29   6.0  

>U53155-3|AAC48267.3|  492|Caenorhabditis elegans Hypothetical
           protein ZC513.5 protein.
          Length = 492

 Score = 89.8 bits (213), Expect = 2e-18
 Identities = 38/62 (61%), Positives = 51/62 (82%), Gaps = 1/62 (1%)
 Frame = +2

Query: 164 VASLHLLLCPFTKVEESFNIQAVHDILYHRH-NLSEYDHNEFPGVVPRTFIGPLIISMLC 340
           V  +H++L P TKVEESFN+QA HD+++H   NLS YDH++FPGVVPRTFIGP+ +++L 
Sbjct: 11  VTIIHIILAPGTKVEESFNVQATHDLMFHLPTNLSNYDHSQFPGVVPRTFIGPISLAILS 70

Query: 341 SP 346
           SP
Sbjct: 71  SP 72


>AF068721-4|AAC19260.1|  298|Caenorhabditis elegans Hypothetical
           protein ZK1055.2 protein.
          Length = 298

 Score = 31.9 bits (69), Expect = 0.64
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = -2

Query: 324 MSGPINVRGTTPGNSLWSYSERL 256
           +SGPI+++  +P NS WSY  RL
Sbjct: 241 LSGPIDLQKCSPQNSTWSYDSRL 263


>AL031630-12|CAA20991.1|  375|Caenorhabditis elegans Hypothetical
           protein Y38H6C.13 protein.
          Length = 375

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 98  FHCFSGFPFKINVXQCFSFFTFV 166
           F CF  +PFKI +  C +FF F+
Sbjct: 16  FKCFVFYPFKIFLSACSNFFQFI 38


>AL132877-8|CAD91705.1|  339|Caenorhabditis elegans Hypothetical
           protein Y105E8B.2b protein.
          Length = 339

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
 Frame = +3

Query: 114 VFRSKLMFXNASASLHLLQAYIYYFVHSLK*RKVLIFRLCMI-----FYITDITFQSTTT 278
           VFR+   F +AS  +  L+  IY   HSL  +K +I  L M+       I  ++  STTT
Sbjct: 58  VFRNYQQFIDASKEISHLEREIYQLTHSLIEQKQVIENLIMMTGDDKSSIHTVSSHSTTT 117

Query: 279 MSSREL 296
            ++  +
Sbjct: 118 STTNPI 123


>AL132877-7|CAC70108.1|  686|Caenorhabditis elegans Hypothetical
           protein Y105E8B.2a protein.
          Length = 686

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
 Frame = +3

Query: 114 VFRSKLMFXNASASLHLLQAYIYYFVHSLK*RKVLIFRLCMI-----FYITDITFQSTTT 278
           VFR+   F +AS  +  L+  IY   HSL  +K +I  L M+       I  ++  STTT
Sbjct: 58  VFRNYQQFIDASKEISHLEREIYQLTHSLIEQKQVIENLIMMTGDDKSSIHTVSSHSTTT 117

Query: 279 MSSREL 296
            ++  +
Sbjct: 118 STTNPI 123


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,905,635
Number of Sequences: 27780
Number of extensions: 340858
Number of successful extensions: 722
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2286823924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)