Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP27_F_K11
(872 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0037 - 17452503-17452523,17452594-17452689,17453315-174534... 33 0.39
06_02_0361 - 15168735-15168754,15168783-15169248 31 0.91
03_05_0976 - 29341981-29342229,29342388-29342621,29342771-293430... 31 1.6
10_07_0051 - 12373146-12373517,12375836-12376105,12377560-12377799 29 6.4
04_04_1229 - 31906854-31907300,31907986-31908181,31908631-319087... 29 6.4
12_02_1228 - 27190983-27191291,27191442-27191675,27191994-271922... 28 8.5
12_02_1189 - 26804775-26804930,26805020-26805123,26805346-268056... 28 8.5
10_08_0272 - 16387422-16387427,16387428-16387526,16387688-163881... 28 8.5
08_02_1379 - 26540012-26540587,26540804-26540995,26541777-265418... 28 8.5
07_01_1180 - 11188789-11188797,11189032-11189068,11190328-111903... 28 8.5
>01_05_0037 -
17452503-17452523,17452594-17452689,17453315-17453419,
17453699-17453869,17454309-17454378,17454698-17454879,
17457297-17457406,17458353-17458457,17458537-17458615,
17458722-17458762,17459019-17459097,17460620-17460814
Length = 417
Score = 32.7 bits (71), Expect = 0.39
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Frame = -2
Query: 334 QSRGQNLGSFLGRHIYRYRLSDIPLYTGIRLCSTLASPMG--RA*VSPSLSTSLGRNVLG 161
QS NLG GRH+ + + P Y ++ C L + +G A + L T+L N+L
Sbjct: 121 QSLAANLGIITGRHLAELCMGEYPKY--VKYCLWLLAELGVIAATIPGVLGTALAYNMLL 178
Query: 160 HI 155
HI
Sbjct: 179 HI 180
>06_02_0361 - 15168735-15168754,15168783-15169248
Length = 161
Score = 31.5 bits (68), Expect = 0.91
Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 4/75 (5%)
Frame = +1
Query: 205 PMPCPLVRQEYCKAGCLCKEGYLKD---DSGKCVARENCPNSDLCSENEIYV-KCVQAQC 372
P PCP Q+ C +L D + K A +N S L EN+ + + +
Sbjct: 44 PEPCPSCHQDVVLDSCQETTSFLHDASLEKEKLQAMDNLETSTLEDENDTFEHESFSFKF 103
Query: 373 SPMTCSKKDGPKICP 417
+CS K+ + CP
Sbjct: 104 PQESCSHKESSEFCP 118
>03_05_0976 -
29341981-29342229,29342388-29342621,29342771-29343046,
29343181-29343457,29343549-29343847,29344021-29344152,
29344451-29344660,29344812-29344875,29346114-29346260,
29346477-29346760
Length = 723
Score = 30.7 bits (66), Expect = 1.6
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Frame = -3
Query: 768 ISFSEQRSAEFCKFDQITIWXVFSGDTFT-AIVFQISLFTH----ASGFAGLFLHQWADL 604
IS S ++ + CK TIW VF + + +++ Q+++FT S A L Q
Sbjct: 416 ISRSGRKKSACCKILFFTIWNVFFVNVLSGSVLNQLNVFTRPRDMPSMLAELVPKQATFF 475
Query: 603 RTVLL*ARHWAALCLDTVHIY 541
T +L WA+LC + + +Y
Sbjct: 476 ITYVL-TSGWASLCSEILQVY 495
>10_07_0051 - 12373146-12373517,12375836-12376105,12377560-12377799
Length = 293
Score = 28.7 bits (61), Expect = 6.4
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = -2
Query: 643 RLCRTFPPPMGRS*DRPSLSTSLGCTVLGHSSHIFH 536
R C++ P GR+ + P+LS+S TV G SH H
Sbjct: 228 RRCQSSPIRGGRAQEMPTLSSSTPSTVGGLGSHCRH 263
>04_04_1229 -
31906854-31907300,31907986-31908181,31908631-31908756,
31909962-31910329,31910680-31910835,31910968-31911168,
31911230-31911375,31911439-31911865,31912527-31912627,
31913197-31913254
Length = 741
Score = 28.7 bits (61), Expect = 6.4
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -2
Query: 589 LSTSLGCTVLGHSSHIFHFQSRGQNLGSFLGRHIYRYRL 473
LS +LGC + S H++ G+ +G FL RL
Sbjct: 194 LSMALGCNISLTSLHLYEVHISGEEIGQFLSNSFALERL 232
>12_02_1228 -
27190983-27191291,27191442-27191675,27191994-27192269,
27192420-27192696,27192985-27193283,27193341-27193454,
27193909-27194118,27194567-27194699,27194941-27195221
Length = 710
Score = 28.3 bits (60), Expect = 8.5
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -3
Query: 768 ISFSEQRSAEFCKFDQITIWXVFSGDTFTAIV 673
IS SE++ + CK T+W +F G+ + V
Sbjct: 383 ISHSERKRSACCKVLYFTVWNIFFGNVLSGTV 414
>12_02_1189 -
26804775-26804930,26805020-26805123,26805346-26805610,
26805697-26805795,26806284-26806425,26806516-26806621,
26806718-26806785,26806870-26806929,26807292-26807566,
26807671-26807748,26808137-26808391,26809167-26809199,
26809312-26809444,26810060-26810202,26810249-26810327,
26810434-26810533,26811278-26811521,26811620-26811735,
26811845-26812004,26812347-26812574
Length = 947
Score = 28.3 bits (60), Expect = 8.5
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = -3
Query: 657 FTHASGFAGLFLHQWADLRTVLL*ARHWAALCLDTVHIYF 538
F +++G GLF + + +++ A LCL +H YF
Sbjct: 354 FDYSAGMQGLFSRTASPFQDIIVGKYESALLCLGNLHCYF 393
>10_08_0272 -
16387422-16387427,16387428-16387526,16387688-16388122,
16388408-16388738,16390821-16390961,16391668-16391736,
16392077-16392312
Length = 438
Score = 28.3 bits (60), Expect = 8.5
Identities = 17/60 (28%), Positives = 25/60 (41%)
Frame = -3
Query: 282 IVFQISLFTQASGFAVLLPHQWAGHR*VLL*ARPWAAMCLDTFHVYFIFRAEVSCTEDDD 103
+V + LF + LP WA H V + W + D+ H Y +F E+DD
Sbjct: 225 VVQMLDLFNKNKSLMPDLPGPWAPHWPVSAASDIWVTITGDSSH-YILFYGRAVYVEEDD 283
>08_02_1379 -
26540012-26540587,26540804-26540995,26541777-26541812,
26542255-26542488
Length = 345
Score = 28.3 bits (60), Expect = 8.5
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +2
Query: 644 DACVKRDI*KTIAVNVSPEK--TXQIVIWSNLQNSADLCSENEI 769
+AC RD+ KTIAVN+ P V +SNL N L + +++
Sbjct: 249 EAC-PRDVGKTIAVNMDPVSPIVFDNVYYSNLVNGLGLFTSDQV 291
>07_01_1180 -
11188789-11188797,11189032-11189068,11190328-11190392,
11190464-11190562,11190707-11190878,11190973-11191325,
11191451-11191561,11191637-11191708,11192203-11192420,
11192546-11192594,11192697-11192750,11192876-11192958,
11193088-11193304,11193387-11193510,11194042-11194105,
11194413-11194500,11194623-11194724,11194842-11194937
Length = 670
Score = 28.3 bits (60), Expect = 8.5
Identities = 13/45 (28%), Positives = 20/45 (44%)
Frame = +2
Query: 737 NSADLCSENEIYVKCVQAHCGPRTCSEKDLPMPXPLVXQXYCKTG 871
N A++C + + C R+CSEKD + + CK G
Sbjct: 249 NEANICETPKSPMLCKDTKTPERSCSEKDKNFDVDGIMRKLCKPG 293
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,844,356
Number of Sequences: 37544
Number of extensions: 588034
Number of successful extensions: 1657
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1064
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1656
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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