Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_K10
         (897 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0800 - 19820886-19821421,19822476-19822563,19822871-19822888     29   5.0  
12_02_0843 + 23593765-23593961,23594474-23594537                       29   6.6  
03_05_0464 - 24585422-24585441,24585585-24585690,24585779-245859...    29   6.6  
08_02_1291 + 25930056-25930067,25930289-25930334,25930434-259305...    28   8.8  
04_03_0890 + 20576843-20578119,20578563-20578806,20578890-20580002     28   8.8  

>04_03_0800 - 19820886-19821421,19822476-19822563,19822871-19822888
          Length = 213

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +3

Query: 765 CFRSGGXVGXFFCXNESXNPPGKXVCXLGAFPVPXSXEP 881
           C ++GG V       ++  PP + VC L  FPVP    P
Sbjct: 68  CCKAGGKVVKDIKTVDAWPPPKEQVCKLVPFPVPYPAPP 106


>12_02_0843 + 23593765-23593961,23594474-23594537
          Length = 86

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 427 HCKILKLCGWTLLRQRSP 374
           HC IL LC WT L  ++P
Sbjct: 30  HCTILLLCSWTSLELKTP 47


>03_05_0464 -
           24585422-24585441,24585585-24585690,24585779-24585926,
           24586017-24586144,24586804-24586939,24587711-24587895
          Length = 240

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 18/56 (32%), Positives = 32/56 (57%)
 Frame = -3

Query: 394 LLRQRSP*CSACLVGNSLPEPELIHRNSSH*LLH*PRCRSNLILEFVHNHRTSIYL 227
           LLR  +P C+ C +G SLP PE   +N ++      RC ++L++++  +  T  Y+
Sbjct: 36  LLRPSAPPCAVCSLGVSLP-PE---QNPNY------RCNTSLLIDYCQDDGTHEYI 81


>08_02_1291 +
           25930056-25930067,25930289-25930334,25930434-25930546,
           25930645-25930930,25931357-25931421,25931642-25931693,
           25931774-25931883,25932611-25932641,25932853-25933004,
           25934622-25934840
          Length = 361

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
 Frame = +1

Query: 118 CTDVDY-FDDVVNMLMNYDDRLVASGEEEEGEQ---PVLSEGIWKCGDCEQI 261
           C ++++ F  V NM      R    G + +G +   P + EG WKC  C  I
Sbjct: 204 CNNINFAFRTVCNMRKCNTPRPENQGSKPDGARGPKPKMPEGSWKCEKCNNI 255


>04_03_0890 + 20576843-20578119,20578563-20578806,20578890-20580002
          Length = 877

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 26/98 (26%), Positives = 46/98 (46%)
 Frame = +1

Query: 190 GEEEEGEQPVLSEGIWKCGDCEQIQESNLIYNEVNEVISDLNSDESVQVQVSYSLQDMRC 369
           G  E  +QPVL+  I    + EQ+  S L    V+ V+ +     S QV+ +    +  C
Sbjct: 126 GSVETQQQPVLAVKI----ELEQLVVSILDDPSVSRVMREAGFS-STQVKANV---EQAC 177

Query: 370 ITVSADEAKSIRRVSGSCSGDSVTLSVTPTRSYQFTVK 483
            T +A  A   +  + SC+G + T + T + ++   +K
Sbjct: 178 STTTATSAPPNQNPNPSCTGAAATATATTSPAHPPEIK 215


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,714,919
Number of Sequences: 37544
Number of extensions: 285117
Number of successful extensions: 674
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 674
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)