Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_K08
         (892 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC070050-1|AAH70050.1| 1022|Homo sapiens SRRM2 protein protein.        34   0.80 
AF201422-1|AAF21439.1| 2296|Homo sapiens splicing coactivator su...    34   0.80 
AB016092-1|BAA83718.1| 2752|Homo sapiens RNA binding protein pro...    34   0.80 
AB016088-1|BAA83714.1|  956|Homo sapiens RNA binding protein pro...    34   0.80 
AB016087-1|BAA83713.1| 1262|Homo sapiens RNA binding protein pro...    34   0.80 
AB002322-1|BAA20782.3| 2800|Homo sapiens KIAA0324 protein protein.     34   0.80 

>BC070050-1|AAH70050.1| 1022|Homo sapiens SRRM2 protein protein.
          Length = 1022

 Score = 33.9 bits (74), Expect = 0.80
 Identities = 31/116 (26%), Positives = 48/116 (41%), Gaps = 2/116 (1%)
 Frame = -2

Query: 849 PGWTQDDSYRIRRTGRXERGVRAHSPAWSERXTPN*DTYSVSYEXAPRFP-KGEKXDRYP 673
           PGW++  + + R   R  R  R+HS + + R      T +       R P +     R P
Sbjct: 540 PGWSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTP 599

Query: 672 GKRQXRNRR-AHEGASQGXTPGIFIVLSGFATSDLSVDFCDARQGGGAYGKTPATR 508
            +R+ R+R  A  G S+  TP      +       S     AR+ G +  +TPA R
Sbjct: 600 TRRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSRSPARRSGRSRSRTPARR 655


>AF201422-1|AAF21439.1| 2296|Homo sapiens splicing coactivator
           subunit SRm300 protein.
          Length = 2296

 Score = 33.9 bits (74), Expect = 0.80
 Identities = 31/116 (26%), Positives = 48/116 (41%), Gaps = 2/116 (1%)
 Frame = -2

Query: 849 PGWTQDDSYRIRRTGRXERGVRAHSPAWSERXTPN*DTYSVSYEXAPRFP-KGEKXDRYP 673
           PGW++  + + R   R  R  R+HS + + R      T +       R P +     R P
Sbjct: 540 PGWSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTP 599

Query: 672 GKRQXRNRR-AHEGASQGXTPGIFIVLSGFATSDLSVDFCDARQGGGAYGKTPATR 508
            +R+ R+R  A  G S+  TP      +       S     AR+ G +  +TPA R
Sbjct: 600 TRRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSRSPARRSGRSRSRTPARR 655


>AB016092-1|BAA83718.1| 2752|Homo sapiens RNA binding protein
           protein.
          Length = 2752

 Score = 33.9 bits (74), Expect = 0.80
 Identities = 31/116 (26%), Positives = 48/116 (41%), Gaps = 2/116 (1%)
 Frame = -2

Query: 849 PGWTQDDSYRIRRTGRXERGVRAHSPAWSERXTPN*DTYSVSYEXAPRFP-KGEKXDRYP 673
           PGW++  + + R   R  R  R+HS + + R      T +       R P +     R P
Sbjct: 540 PGWSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTP 599

Query: 672 GKRQXRNRR-AHEGASQGXTPGIFIVLSGFATSDLSVDFCDARQGGGAYGKTPATR 508
            +R+ R+R  A  G S+  TP      +       S     AR+ G +  +TPA R
Sbjct: 600 TRRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSRSPARRSGRSRSRTPARR 655


>AB016088-1|BAA83714.1|  956|Homo sapiens RNA binding protein
           protein.
          Length = 956

 Score = 33.9 bits (74), Expect = 0.80
 Identities = 31/116 (26%), Positives = 48/116 (41%), Gaps = 2/116 (1%)
 Frame = -2

Query: 849 PGWTQDDSYRIRRTGRXERGVRAHSPAWSERXTPN*DTYSVSYEXAPRFP-KGEKXDRYP 673
           PGW++  + + R   R  R  R+HS + + R      T +       R P +     R P
Sbjct: 505 PGWSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTP 564

Query: 672 GKRQXRNRR-AHEGASQGXTPGIFIVLSGFATSDLSVDFCDARQGGGAYGKTPATR 508
            +R+ R+R  A  G S+  TP      +       S     AR+ G +  +TPA R
Sbjct: 565 TRRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSRSPARRSGRSRSRTPARR 620


>AB016087-1|BAA83713.1| 1262|Homo sapiens RNA binding protein
           protein.
          Length = 1262

 Score = 33.9 bits (74), Expect = 0.80
 Identities = 31/116 (26%), Positives = 48/116 (41%), Gaps = 2/116 (1%)
 Frame = -2

Query: 849 PGWTQDDSYRIRRTGRXERGVRAHSPAWSERXTPN*DTYSVSYEXAPRFP-KGEKXDRYP 673
           PGW++  + + R   R  R  R+HS + + R      T +       R P +     R P
Sbjct: 330 PGWSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTP 389

Query: 672 GKRQXRNRR-AHEGASQGXTPGIFIVLSGFATSDLSVDFCDARQGGGAYGKTPATR 508
            +R+ R+R  A  G S+  TP      +       S     AR+ G +  +TPA R
Sbjct: 390 TRRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSRSPARRSGRSRSRTPARR 445


>AB002322-1|BAA20782.3| 2800|Homo sapiens KIAA0324 protein protein.
          Length = 2800

 Score = 33.9 bits (74), Expect = 0.80
 Identities = 31/116 (26%), Positives = 48/116 (41%), Gaps = 2/116 (1%)
 Frame = -2

Query: 849 PGWTQDDSYRIRRTGRXERGVRAHSPAWSERXTPN*DTYSVSYEXAPRFP-KGEKXDRYP 673
           PGW++  + + R   R  R  R+HS + + R      T +       R P +     R P
Sbjct: 588 PGWSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTP 647

Query: 672 GKRQXRNRR-AHEGASQGXTPGIFIVLSGFATSDLSVDFCDARQGGGAYGKTPATR 508
            +R+ R+R  A  G S+  TP      +       S     AR+ G +  +TPA R
Sbjct: 648 TRRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSRSPARRSGRSRSRTPARR 703


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,112,348
Number of Sequences: 237096
Number of extensions: 2540788
Number of successful extensions: 6475
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6475
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11437206932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)