Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_K08
         (892 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      25   1.2  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   6.5  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    22   6.5  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   6.5  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 14/42 (33%), Positives = 16/42 (38%)
 Frame = +3

Query: 582 WRNPTGL*RYQAFXPGKLPRALSCSXPAAYRDTCPXFLPSGS 707
           + NP    RYQ    GK+ R L         D  P FL   S
Sbjct: 91  YENPDEEKRYQEHPNGKILRELQTDYDRRLHDNSPSFLSDHS 132


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 2/70 (2%)
 Frame = +1

Query: 463 TCEQKASKRPGTVKRPR--CWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRXPLGSS 636
           T      +R   V +PR   WR +I S           ++  G + +D+K TR     + 
Sbjct: 382 TAPNAEERRVQGVTKPRYMVWRETISSTATLGFRVEGIKLAHGGSSKDFKTTRTREQVTE 441

Query: 637 LVRSPVPXLP 666
            +R  V   P
Sbjct: 442 ALRRFVEGYP 451


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 2/70 (2%)
 Frame = +1

Query: 463 TCEQKASKRPGTVKRPR--CWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRXPLGSS 636
           T      +R   V +PR   WR +I S           ++  G + +D+K TR     + 
Sbjct: 297 TAPNAEERRVQGVTKPRYMVWRETISSTATLGFRVEGIKLAHGGSSKDFKTTRTREQVTE 356

Query: 637 LVRSPVPXLP 666
            +R  V   P
Sbjct: 357 ALRRFVEGYP 366


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 2/70 (2%)
 Frame = +1

Query: 463 TCEQKASKRPGTVKRPR--CWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRXPLGSS 636
           T      +R   V +PR   WR +I S           ++  G + +D+K TR     + 
Sbjct: 616 TAPNAEERRVQGVTKPRYMVWRETISSTATLGFRVEGIKLAHGGSSKDFKTTRTREQVTE 675

Query: 637 LVRSPVPXLP 666
            +R  V   P
Sbjct: 676 ALRRFVEGYP 685


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 226,094
Number of Sequences: 438
Number of extensions: 5123
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28783482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)