Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP27_F_K07
(968 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC970.05 |rpl3601|rpl36-1|60S ribosomal protein L36|Schizosacc... 29 0.98
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 1.3
SPBC405.07 |rpl3602|rpl36-2, rpl36|60S ribosomal protein L36|Sch... 29 1.3
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 4.0
SPAC8C9.16c |mug63||TLDc domain protein 1|Schizosaccharomyces po... 26 6.9
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 26 6.9
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 26 9.2
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 9.2
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c... 26 9.2
>SPCC970.05 |rpl3601|rpl36-1|60S ribosomal protein
L36|Schizosaccharomyces pombe|chr 3|||Manual
Length = 99
Score = 29.1 bits (62), Expect = 0.98
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +3
Query: 414 KGITDKAIRIRPARLKGLQTKHSKFVRDLVR 506
K +T + + RP+R KG +K + FVR +VR
Sbjct: 13 KVLTKRQLPERPSRRKGQLSKRTSFVRSIVR 43
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 28.7 bits (61), Expect = 1.3
Identities = 19/78 (24%), Positives = 24/78 (30%), Gaps = 5/78 (6%)
Frame = +2
Query: 743 LPFXPXXPXXLXPPPXPXXPHLXPPPPXAXXTXRLGXAXPPPXSXXXRPVXXXPP----- 907
+P P PPP P PP + + PP + R PP
Sbjct: 351 IPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNAS 410
Query: 908 XTXSXSXPXRXXXPPHAP 961
T + P PP AP
Sbjct: 411 RTSTPPVPTPPSLPPSAP 428
Score = 26.6 bits (56), Expect = 5.3
Identities = 24/104 (23%), Positives = 26/104 (25%)
Frame = +2
Query: 596 KXPIGGPHIRPKEEXVEELXXXAXXPXPERXPAXGSSPXPXNSXXXXLFLPFXPXXPXXL 775
K P+ P R + P P G P S L P P
Sbjct: 289 KPPLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAA 348
Query: 776 XPPPXPXXPHLXPPPPXAXXTXRLGXAXPPPXSXXXRPVXXXPP 907
P P PPPP G PP S PP
Sbjct: 349 GSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPP 392
>SPBC405.07 |rpl3602|rpl36-2, rpl36|60S ribosomal protein
L36|Schizosaccharomyces pombe|chr 2|||Manual
Length = 99
Score = 28.7 bits (61), Expect = 1.3
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +3
Query: 414 KGITDKAIRIRPARLKGLQTKHSKFVRDLVR 506
K +T + + RP+R KG +K + FVR +VR
Sbjct: 13 KTLTKRQLPERPSRRKGHLSKRTAFVRSIVR 43
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.1 bits (57), Expect = 4.0
Identities = 12/35 (34%), Positives = 14/35 (40%)
Frame = +2
Query: 764 PXXLXPPPXPXXPHLXPPPPXAXXTXRLGXAXPPP 868
P + P P P PPPP A + PPP
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPP 1733
Score = 26.2 bits (55), Expect = 6.9
Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 4/41 (9%)
Frame = +2
Query: 713 PXNSXXXXLFLPFXPXXPXXLXP----PPXPXXPHLXPPPP 823
P ++ + P P P + P PP P P PPPP
Sbjct: 1694 PQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734
>SPAC8C9.16c |mug63||TLDc domain protein 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 188
Score = 26.2 bits (55), Expect = 6.9
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -2
Query: 160 FFSSSRSFLQKPRPPKKPPHY 98
+F S +FL K PPKK HY
Sbjct: 97 YFGSEETFLWKYFPPKKYVHY 117
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 26.2 bits (55), Expect = 6.9
Identities = 12/30 (40%), Positives = 14/30 (46%), Gaps = 3/30 (10%)
Frame = +2
Query: 743 LPFXPXXPXXLXPPPXPXXPHL---XPPPP 823
+P P P PPP P P + PPPP
Sbjct: 749 IPVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778
Score = 25.8 bits (54), Expect = 9.2
Identities = 16/52 (30%), Positives = 18/52 (34%), Gaps = 3/52 (5%)
Frame = +2
Query: 812 PPPPXAXXTXRLGXAX---PPPXSXXXRPVXXXPPXTXSXSXPXRXXXPPHA 958
PPPP A A PPP P PP + + P PP A
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPA 784
Score = 25.8 bits (54), Expect = 9.2
Identities = 15/50 (30%), Positives = 17/50 (34%)
Frame = +1
Query: 760 PPXXIXPSTVXXXSXSPXPPPPXIXHXXTGXRXXPSXFXLXPAXXPXPPP 909
PP I P+ + P PPP I P P P PPP
Sbjct: 736 PPAVIVPTPAP--APIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 25.8 bits (54), Expect = 9.2
Identities = 16/70 (22%), Positives = 21/70 (30%), Gaps = 3/70 (4%)
Frame = +1
Query: 760 PPXXIXPSTVXXXSXSP---XPPPPXIXHXXTGXRXXPSXFXLXPAXXPXPPPXXIXQXT 930
PP P+T +P PPPP + + A P PP +
Sbjct: 173 PPSAAAPATSLPSDYNPPPPPPPPPAVEDQAADANEPDDYYSSGRAVSPEIPPTYTPKQA 232
Query: 931 XSXXXXPPRP 960
PP P
Sbjct: 233 DPLPAPPPPP 242
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 25.8 bits (54), Expect = 9.2
Identities = 18/66 (27%), Positives = 21/66 (31%), Gaps = 1/66 (1%)
Frame = +2
Query: 671 PXPERXPAXGSS-PXPXNSXXXXLFLPFXPXXPXXLXPPPXPXXPHLXPPPPXAXXTXRL 847
P P + P SS P P P P P + P P P P A + R
Sbjct: 159 PIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPPLSQAPVANTSSRP 218
Query: 848 GXAXPP 865
PP
Sbjct: 219 SSFAPP 224
>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 599
Score = 25.8 bits (54), Expect = 9.2
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = +2
Query: 194 SFISGPGSGGGANQRTAPQWMLPLLLGLYGSVTSALKALFFLRICQ 331
+ ++GP GG QRT +W+ + L G T+ + L C+
Sbjct: 232 ALVAGPIIGGAICQRTTWRWIFFINLPSGGIATALIVVFLHLLPCE 277
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,054,379
Number of Sequences: 5004
Number of extensions: 52485
Number of successful extensions: 192
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 497299314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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