Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_K06
         (904 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces pom...    27   2.8  
SPAC1F7.06 |||ThiJ domain protein|Schizosaccharomyces pombe|chr ...    27   3.6  
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ...    26   6.4  
SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces p...    26   6.4  

>SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 592

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = -2

Query: 213 LRXQGGVPKHRRNRLRQP 160
           L+ +G + KHR+NRLR+P
Sbjct: 90  LKDEGKLGKHRKNRLRRP 107


>SPAC1F7.06 |||ThiJ domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 251

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +1

Query: 463 VNCYDYMAIHKKGGYGCTGELP 528
           +N  DY+ ++  GGYGC+ + P
Sbjct: 105 LNPSDYVIVYIPGGYGCSFDFP 126


>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = -3

Query: 281 VSPSHCRPCLHPEIAWQMQPRHT 213
           VS  HC  C H E  W    R+T
Sbjct: 204 VSLKHCEDCFHWEAVWSSITRNT 226


>SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 612

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = +3

Query: 648 NPSVIVSISTNIIFTMNLYNSSRIGINNVHIKAFSSKDSSCIRNTNWKM 794
           +P  ++ + T   F   L++S R+ ++ VHI A  S+  + + NTN  M
Sbjct: 176 DPRSVMQVQTIRAFEF-LFSSHRLYLDTVHITAALSQVLAGLGNTNTSM 223


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,441,945
Number of Sequences: 5004
Number of extensions: 70758
Number of successful extensions: 143
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)