Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_K05
         (967 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   3.0  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   6.1  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    22   8.0  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 11/31 (35%), Positives = 11/31 (35%)
 Frame = +1

Query: 658 PPPPPXXXXXXXXXXXGXXKXGXXTXPPPPP 750
           PPPPP           G         PPPPP
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPPPPP 342



 Score = 26.6 bits (56), Expect = 5.2
 Identities = 11/31 (35%), Positives = 11/31 (35%)
 Frame = +3

Query: 657 PPPPPXXXXXXXXXXXGXXKXGXXNXPPPPP 749
           PPPPP           G         PPPPP
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPPPPP 342



 Score = 26.2 bits (55), Expect = 6.9
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +2

Query: 911 KXXPPPPPPXXXXQKXPPL 967
           K  PPPPPP    +  PP+
Sbjct: 309 KRPPPPPPPSRRNRGKPPI 327


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 14/37 (37%), Positives = 14/37 (37%)
 Frame = +3

Query: 657 PPPPPXXXXXXXXXXXGXXKXGXXNXPPPPPXXGGGG 767
           PPPPP           G    G    PPPPP    GG
Sbjct: 761 PPPPPPPP--------GVAGAGPPPPPPPPPAVSAGG 789



 Score = 23.8 bits (49), Expect(2) = 6.1
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -1

Query: 892 PPPPPPP 872
           PPPPPPP
Sbjct: 776 PPPPPPP 782



 Score = 20.6 bits (41), Expect(2) = 6.1
 Identities = 7/16 (43%), Positives = 7/16 (43%)
 Frame = -1

Query: 766 PPPPXXGGGGGXXXXP 719
           PPPP    GG     P
Sbjct: 780 PPPPAVSAGGSRYYAP 795


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 22.2 bits (45), Expect(2) = 8.0
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +2

Query: 920  PPPPPPXXXXQK 955
            PPPPPP    +K
Sbjct: 1096 PPPPPPPAEVEK 1107



 Score = 21.8 bits (44), Expect(2) = 8.0
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 905  KXKXXPPPPPP 937
            K    PPPPPP
Sbjct: 1090 KPSAVPPPPPP 1100


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,781,865
Number of Sequences: 5004
Number of extensions: 20882
Number of successful extensions: 295
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 495302128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)