Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_K04
         (903 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   0.60 
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    24   1.6  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    24   2.2  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   5.0  
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         23   5.0  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.6 bits (46), Expect(2) = 0.60
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -2

Query: 830  PXPPPPPXXGK 798
            P PPPPP  G+
Sbjct: 1356 PPPPPPPSSGQ 1366



 Score = 21.0 bits (42), Expect(2) = 0.60
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = -2

Query: 833  KPXPPPPP 810
            +P PPPPP
Sbjct: 1354 QPPPPPPP 1361


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 11/18 (61%), Positives = 12/18 (66%), Gaps = 1/18 (5%)
 Frame = +1

Query: 262 RQSGPGDRGPR-FS*SHR 312
           R  GPG +GPR F  SHR
Sbjct: 56  RNPGPGSKGPRDFPRSHR 73


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -2

Query: 845 FXXXKPXPPPPPXXG 801
           F   +P PPPPP  G
Sbjct: 369 FDLDEPLPPPPPIRG 383


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -2

Query: 833 KPXPPPPP 810
           KP PPPPP
Sbjct: 340 KPAPPPPP 347


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -2

Query: 212 STWAREQHWSCSKPAPERRRRIGSLRNSL 126
           S W    H +C+     +RR+ GS RN +
Sbjct: 71  SKWLSINHSACAIRCLAQRRKGGSCRNGV 99


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,018
Number of Sequences: 438
Number of extensions: 3347
Number of successful extensions: 14
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29267238
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)