Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_K02
         (800 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    24   1.7  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    25   1.8  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    25   9.5  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 23.8 bits (49), Expect(2) = 1.7
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -3

Query: 786 PPPPPPP 766
           PPPPPPP
Sbjct: 24  PPPPPPP 30



 Score = 22.2 bits (45), Expect(2) = 1.7
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -3

Query: 798 GXXXPPPPPP 769
           G   PPPPPP
Sbjct: 7   GNPPPPPPPP 16


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/35 (34%), Positives = 13/35 (37%)
 Frame = -2

Query: 523 PPPPPXXXXPPXXXXGXXXXXXXPPPXXXGGGXXF 419
           PPPPP    PP            PPP    GG  +
Sbjct: 761 PPPPPP---PPGVAGAGPPPPPPPPPAVSAGGSRY 792



 Score = 23.8 bits (49), Expect(2) = 1.8
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -3

Query: 786 PPPPPPP 766
           PPPPPPP
Sbjct: 777 PPPPPPP 783



 Score = 22.2 bits (45), Expect(2) = 1.8
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -3

Query: 798 GXXXPPPPPP 769
           G   PPPPPP
Sbjct: 759 GGPPPPPPPP 768


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/26 (38%), Positives = 10/26 (38%)
 Frame = -1

Query: 521  PPPPXKXXPPPLXXGXXXXXXXXPPP 444
            PPPP    PPP            PPP
Sbjct: 1708 PPPPMSVPPPPSAPPMPAGPPSAPPP 1733


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,417,888
Number of Sequences: 5004
Number of extensions: 38230
Number of successful extensions: 214
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)