Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP27_F_K01
(990 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 34 0.18
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 34 0.18
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 32 0.55
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 32 0.55
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 32 0.55
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 31 1.3
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 31 1.3
AL023835-10|CAA19494.2| 691|Caenorhabditis elegans Hypothetical... 30 2.9
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 6.8
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 6.8
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 6.8
AF098501-3|AAM69106.1| 275|Caenorhabditis elegans Hypothetical ... 28 8.9
AF098501-2|AAM69105.1| 298|Caenorhabditis elegans Hypothetical ... 28 8.9
AF098501-1|AAC67404.2| 548|Caenorhabditis elegans Hypothetical ... 28 8.9
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 33.9 bits (74), Expect = 0.18
Identities = 26/90 (28%), Positives = 29/90 (32%), Gaps = 1/90 (1%)
Frame = +2
Query: 704 PPPPXNXXPLYXXPPPXPXXXXPRXXXXPXXXAXLPXPXTXXNSQVXXXPG-XXX*ETPX 880
PPPP + P+ PP P PR P P P + PG P
Sbjct: 264 PPPPPSVTPMPPPMPPTP-GMTPR-PPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPP 321
Query: 881 XSRXGPPPXXXPVXXXPPXXPAGGXXXXPP 970
SR GPP PP G PP
Sbjct: 322 PSRFGPPGMGGMPPPPPPGMRYPGGMPPPP 351
Score = 28.3 bits (60), Expect = 8.9
Identities = 22/89 (24%), Positives = 23/89 (25%)
Frame = +2
Query: 704 PPPPXNXXPLYXXPPPXPXXXXPRXXXXPXXXAXLPXPXTXXNSQVXXXPGXXX*ETPXX 883
PPPP P P P P P P P P P
Sbjct: 300 PPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPP----PRY 355
Query: 884 SRXGPPPXXXPVXXXPPXXPAGGXXXXPP 970
GP P PP P+G PP
Sbjct: 356 PSAGPGMYPPPPPSRPPAPPSGHGMIPPP 384
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 33.9 bits (74), Expect = 0.18
Identities = 26/90 (28%), Positives = 29/90 (32%), Gaps = 1/90 (1%)
Frame = +2
Query: 704 PPPPXNXXPLYXXPPPXPXXXXPRXXXXPXXXAXLPXPXTXXNSQVXXXPG-XXX*ETPX 880
PPPP + P+ PP P PR P P P + PG P
Sbjct: 274 PPPPPSVTPMPPPMPPTP-GMTPR-PPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPP 331
Query: 881 XSRXGPPPXXXPVXXXPPXXPAGGXXXXPP 970
SR GPP PP G PP
Sbjct: 332 PSRFGPPGMGGMPPPPPPGMRYPGGMPPPP 361
Score = 28.3 bits (60), Expect = 8.9
Identities = 22/89 (24%), Positives = 23/89 (25%)
Frame = +2
Query: 704 PPPPXNXXPLYXXPPPXPXXXXPRXXXXPXXXAXLPXPXTXXNSQVXXXPGXXX*ETPXX 883
PPPP P P P P P P P P P
Sbjct: 310 PPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPP----PRY 365
Query: 884 SRXGPPPXXXPVXXXPPXXPAGGXXXXPP 970
GP P PP P+G PP
Sbjct: 366 PSAGPGMYPPPPPSRPPAPPSGHGMIPPP 394
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 32.3 bits (70), Expect = 0.55
Identities = 28/91 (30%), Positives = 29/91 (31%), Gaps = 2/91 (2%)
Frame = +2
Query: 704 PPPPXNXXPLYXXPPPXPXXXXPRXXXXPXXXAXLPXPXTXXNSQVXXXPGXXX*ETPXX 883
PPPP P+ PPP P P P P P PG P
Sbjct: 713 PPPPPGLPPITGGPPPPP----PPGGLPPITGGPPPPP----------PPGG----LPPI 754
Query: 884 SRXGPPPXXXP--VXXXPPXXPAGGXXXXPP 970
S PPP P PP P GG PP
Sbjct: 755 SGGPPPPPPPPGGCPPPPPPPPPGGFKGGPP 785
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 32.3 bits (70), Expect = 0.55
Identities = 28/91 (30%), Positives = 29/91 (31%), Gaps = 2/91 (2%)
Frame = +2
Query: 704 PPPPXNXXPLYXXPPPXPXXXXPRXXXXPXXXAXLPXPXTXXNSQVXXXPGXXX*ETPXX 883
PPPP P+ PPP P P P P P PG P
Sbjct: 713 PPPPPGLPPITGGPPPPP----PPGGLPPITGGPPPPP----------PPGG----LPPI 754
Query: 884 SRXGPPPXXXP--VXXXPPXXPAGGXXXXPP 970
S PPP P PP P GG PP
Sbjct: 755 SGGPPPPPPPPGGCPPPPPPPPPGGFKGGPP 785
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 32.3 bits (70), Expect = 0.55
Identities = 28/91 (30%), Positives = 29/91 (31%), Gaps = 2/91 (2%)
Frame = +2
Query: 704 PPPPXNXXPLYXXPPPXPXXXXPRXXXXPXXXAXLPXPXTXXNSQVXXXPGXXX*ETPXX 883
PPPP P+ PPP P P P P P PG P
Sbjct: 296 PPPPPGLPPITGGPPPPP----PPGGLPPITGGPPPPP----------PPGG----LPPI 337
Query: 884 SRXGPPPXXXP--VXXXPPXXPAGGXXXXPP 970
S PPP P PP P GG PP
Sbjct: 338 SGGPPPPPPPPGGCPPPPPPPPPGGFKGGPP 368
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 31.1 bits (67), Expect = 1.3
Identities = 28/94 (29%), Positives = 28/94 (29%), Gaps = 5/94 (5%)
Frame = -1
Query: 969 GGXXXXPPAGXXGGXXXTGXXLGGG-----PXRDXXGVSXXXXPGCXXTWEXLXVXGXGR 805
GG PPA GG G GGG P G GC G G
Sbjct: 45 GGGCAPPPAPCGGGCGGGGGGCGGGGGCAPPPAPCGGGCGGGGGGCGGGGG--GCGGGGG 102
Query: 804 XAXXXGXXXXLGXXXXGXGGGXXYRGXXLXGGGG 703
G G G GGG G GGGG
Sbjct: 103 CGGGGGGCGGGGGGCGGGGGGCGGGGGGCGGGGG 136
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 31.1 bits (67), Expect = 1.3
Identities = 28/94 (29%), Positives = 28/94 (29%), Gaps = 5/94 (5%)
Frame = -1
Query: 969 GGXXXXPPAGXXGGXXXTGXXLGGG-----PXRDXXGVSXXXXPGCXXTWEXLXVXGXGR 805
GG PPA GG G GGG P G GC G G
Sbjct: 45 GGGCAPPPAPCGGGCGGGGGGCGGGGGCAPPPAPCGGGCGGGGGGCGGGGG--GCGGGGG 102
Query: 804 XAXXXGXXXXLGXXXXGXGGGXXYRGXXLXGGGG 703
G G G GGG G GGGG
Sbjct: 103 CGGGGGGCGGGGGGCGGGGGGCGGGGGGCGGGGG 136
>AL023835-10|CAA19494.2| 691|Caenorhabditis elegans Hypothetical
protein Y37A1B.11 protein.
Length = 691
Score = 29.9 bits (64), Expect = 2.9
Identities = 22/92 (23%), Positives = 27/92 (29%), Gaps = 3/92 (3%)
Frame = +2
Query: 704 PPPPXNXXPLYXXPPPXPXXXXPRXXXXPXXXA---XLPXPXTXXNSQVXXXPGXXX*ET 874
P PP + P+Y P P P P + P P + Q P +
Sbjct: 484 PTPPPSPQPVYRLPSPKPVTPEPLPSPTITDVSLAIATPSPEESDDDQELILPSPE--PS 541
Query: 875 PXXSRXGPPPXXXPVXXXPPXXPAGGXXXXPP 970
P PPP P P P PP
Sbjct: 542 PVREPTPPPPPREPTPREPTPEPEPVREPTPP 573
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 28.7 bits (61), Expect = 6.8
Identities = 24/79 (30%), Positives = 25/79 (31%), Gaps = 2/79 (2%)
Frame = +2
Query: 704 PPPPXNXXPLYXX--PPPXPXXXXPRXXXXPXXXAXLPXPXTXXNSQVXXXPGXXX*ETP 877
PPPP PL PPP P P P P P T P +P
Sbjct: 240 PPPPKGSPPLAGSGSPPPPPAAGSP----PPPRTGSPPPPPTGS------PPPPPAGGSP 289
Query: 878 XXSRXGPPPXXXPVXXXPP 934
R G PP P PP
Sbjct: 290 PPPRAGSPPPPPPPRGSPP 308
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 28.7 bits (61), Expect = 6.8
Identities = 24/79 (30%), Positives = 25/79 (31%), Gaps = 2/79 (2%)
Frame = +2
Query: 704 PPPPXNXXPLYXX--PPPXPXXXXPRXXXXPXXXAXLPXPXTXXNSQVXXXPGXXX*ETP 877
PPPP PL PPP P P P P P T P +P
Sbjct: 261 PPPPKGSPPLAGSGSPPPPPAAGSP----PPPRTGSPPPPPTGS------PPPPPAGGSP 310
Query: 878 XXSRXGPPPXXXPVXXXPP 934
R G PP P PP
Sbjct: 311 PPPRAGSPPPPPPPRGSPP 329
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 28.7 bits (61), Expect = 6.8
Identities = 24/79 (30%), Positives = 25/79 (31%), Gaps = 2/79 (2%)
Frame = +2
Query: 704 PPPPXNXXPLYXX--PPPXPXXXXPRXXXXPXXXAXLPXPXTXXNSQVXXXPGXXX*ETP 877
PPPP PL PPP P P P P P T P +P
Sbjct: 246 PPPPKGSPPLAGSGSPPPPPAAGSP----PPPRTGSPPPPPTGS------PPPPPAGGSP 295
Query: 878 XXSRXGPPPXXXPVXXXPP 934
R G PP P PP
Sbjct: 296 PPPRAGSPPPPPPPRGSPP 314
>AF098501-3|AAM69106.1| 275|Caenorhabditis elegans Hypothetical
protein H28G03.2c protein.
Length = 275
Score = 28.3 bits (60), Expect = 8.9
Identities = 21/78 (26%), Positives = 23/78 (29%), Gaps = 2/78 (2%)
Frame = +2
Query: 743 PPPX--PXXXXPRXXXXPXXXAXLPXPXTXXNSQVXXXPGXXX*ETPXXSRXGPPPXXXP 916
PPP P P P +P P + P P S GPPP P
Sbjct: 83 PPPGMGPPPFMPPPIGMPPPPLGMPPPHIGLGAAPYAVP-------PPMSLLGPPPFSVP 135
Query: 917 VXXXPPXXPAGGXXXXPP 970
PP A PP
Sbjct: 136 PSVPPPTSSAAAPIVPPP 153
>AF098501-2|AAM69105.1| 298|Caenorhabditis elegans Hypothetical
protein H28G03.2b protein.
Length = 298
Score = 28.3 bits (60), Expect = 8.9
Identities = 21/78 (26%), Positives = 23/78 (29%), Gaps = 2/78 (2%)
Frame = +2
Query: 743 PPPX--PXXXXPRXXXXPXXXAXLPXPXTXXNSQVXXXPGXXX*ETPXXSRXGPPPXXXP 916
PPP P P P +P P + P P S GPPP P
Sbjct: 106 PPPGMGPPPFMPPPIGMPPPPLGMPPPHIGLGAAPYAVP-------PPMSLLGPPPFSVP 158
Query: 917 VXXXPPXXPAGGXXXXPP 970
PP A PP
Sbjct: 159 PSVPPPTSSAAAPIVPPP 176
>AF098501-1|AAC67404.2| 548|Caenorhabditis elegans Hypothetical
protein H28G03.2a protein.
Length = 548
Score = 28.3 bits (60), Expect = 8.9
Identities = 21/78 (26%), Positives = 23/78 (29%), Gaps = 2/78 (2%)
Frame = +2
Query: 743 PPPX--PXXXXPRXXXXPXXXAXLPXPXTXXNSQVXXXPGXXX*ETPXXSRXGPPPXXXP 916
PPP P P P +P P + P P S GPPP P
Sbjct: 356 PPPGMGPPPFMPPPIGMPPPPLGMPPPHIGLGAAPYAVP-------PPMSLLGPPPFSVP 408
Query: 917 VXXXPPXXPAGGXXXXPP 970
PP A PP
Sbjct: 409 PSVPPPTSSAAAPIVPPP 426
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,401,305
Number of Sequences: 27780
Number of extensions: 132341
Number of successful extensions: 533
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 398
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2584172786
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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