Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_J23
         (929 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0191 + 18927302-18927707,18928747-18928979,18929062-189291...    30   3.0  
08_02_0869 - 22031889-22032017,22032114-22032204,22032289-220323...    29   4.0  
04_03_0513 - 16681227-16683936,16685572-16685966                       29   4.0  
03_02_0197 + 6337212-6337278,6339261-6340517,6340599-6340626,634...    29   4.0  

>05_04_0191 +
           18927302-18927707,18928747-18928979,18929062-18929127,
           18929262-18929340,18929935-18930014,18930099-18930122,
           18930254-18930375,18930902-18931109,18931960-18932006,
           18932914-18932998,18933292-18933355,18933488-18933609
          Length = 511

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
 Frame = +2

Query: 584 LSTMEVKNKMDYVKMMDG--CL---DEKICYNYGIIKENEQFVM 700
           L T E+  K+       G  CL   DE +C+ YG ++ENE +++
Sbjct: 434 LRTKEITQKVKAKNYWQGGVCLAFADEVLCWLYGTVRENEDYIL 477


>08_02_0869 -
           22031889-22032017,22032114-22032204,22032289-22032389,
           22033262-22033303,22033393-22033491,22033616-22033753,
           22033853-22034428,22034897-22035070,22035155-22035290,
           22035694-22035725,22036873-22037125,22037216-22037304,
           22037771-22037824,22038801-22038992,22039065-22039229
          Length = 756

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +3

Query: 801 HSHLPSWVELWVNTELQGTXXGKSXSXSTN 890
           +SHLP W    V   L+GT   KS + S N
Sbjct: 417 YSHLPRWSASLVKDRLKGTPESKSSTFSAN 446


>04_03_0513 - 16681227-16683936,16685572-16685966
          Length = 1034

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 16/33 (48%), Positives = 20/33 (60%)
 Frame = +2

Query: 278  QQGLLHKHESLRKFHDDVQGRIPSQEFGILDLL 376
            Q G+LH+ ESL    +D+ G IP QE   LD L
Sbjct: 905  QLGMLHQLESLDLSSNDLSGEIP-QELASLDFL 936


>03_02_0197 +
           6337212-6337278,6339261-6340517,6340599-6340626,
           6340735-6340897
          Length = 504

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
 Frame = +3

Query: 300 MKAYENFMMMYKVGFLPKNLEFSIFYE-KMREEAIALFKLFYYAKDFECFYKTACYARVY 476
           +  Y  +  M   G +P  L++++F      +EA+    L +Y   F+     A +A  Y
Sbjct: 197 LNVYPYYDYMRSNGVIP--LDYALFRPLPPNKEAVDANTLLHYTNVFDAVVDAAYFAMAY 254

Query: 477 MNQGNVLIRLLHSYYP 524
           +N  NV + +  + +P
Sbjct: 255 LNVTNVPVMVTETGWP 270


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,540,540
Number of Sequences: 37544
Number of extensions: 414016
Number of successful extensions: 906
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 906
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2659245980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)