Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_J22
         (905 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G9.03 |adk1||adenylate kinase Adk1|Schizosaccharomyces pomb...   212   7e-56
SPCC1795.05c |||uridylate kinase|Schizosaccharomyces pombe|chr 3...    74   3e-14
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc...    33   0.056
SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr 1|||Ma...    31   0.23 
SPAC6B12.11 |drc1|sld1|DNA replication protein Drc1|Schizosaccha...    30   0.39 
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac...    28   2.1  
SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase Alg6|Schizosac...    27   2.8  
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb...    27   2.8  
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch...    27   4.8  
SPCC1281.04 |||pyridoxal reductase |Schizosaccharomyces pombe|ch...    26   8.5  
SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner me...    26   8.5  
SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase |Schi...    26   8.5  

>SPAC4G9.03 |adk1||adenylate kinase Adk1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 220

 Score =  212 bits (517), Expect = 7e-56
 Identities = 97/155 (62%), Positives = 126/155 (81%), Gaps = 1/155 (0%)
 Frame = +3

Query: 150 IRAVLLGPPGSGKGTQAPRLKEKYCVCHLSTGDMLRAEVSSGSDLGRRLKKVMDEGKLVS 329
           +R +L+GPPG+GKGTQAP +++KY + HL+TGDMLR++V+  ++LG+  KK+MD+G LVS
Sbjct: 4   MRLILVGPPGAGKGTQAPNIQKKYGIAHLATGDMLRSQVARQTELGKEAKKIMDQGGLVS 63

Query: 330 DEMVVDMI-DKNLDQPECKNGFLLDGFPRTVPQAEKLDDLLAKRKTALDAVIEFGIEDSL 506
           D++V  MI D+ L+ PECKNGF+LDGFPRTV QAEKL  LL + K  L+ V+E  ++D L
Sbjct: 64  DDIVTGMIKDEILNNPECKNGFILDGFPRTVVQAEKLTALLDELKLDLNTVLELQVDDEL 123

Query: 507 LVRRITGRLIHPPSGRSYHEEFHPPKKPMTDDVTG 611
           LVRRITGRL+HP SGRSYH EF+PPK PM DDVTG
Sbjct: 124 LVRRITGRLVHPGSGRSYHLEFNPPKVPMKDDVTG 158



 Score = 41.1 bits (92), Expect = 2e-04
 Identities = 17/23 (73%), Positives = 20/23 (86%)
 Frame = +1

Query: 610 GEALIKRSDDNVEALKKRLATYH 678
           GE LI+RSDDN +AL+KRL TYH
Sbjct: 158 GEPLIQRSDDNADALRKRLVTYH 180


>SPCC1795.05c |||uridylate kinase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 191

 Score = 73.7 bits (173), Expect = 3e-14
 Identities = 41/107 (38%), Positives = 63/107 (58%), Gaps = 4/107 (3%)
 Frame = +3

Query: 162 LLGPPGSGKGTQAPRLKEKY-CVCHLSTGDMLRAEVS-SGSDLGRRLKKVMDEGKLVSDE 335
           +LG PG+GKGTQ  RL EK+    H+S GD LR E +  GS  G  +K+ + +GK+V  E
Sbjct: 7   VLGGPGAGKGTQCDRLAEKFDKFVHISAGDCLREEQNRPGSKYGNLIKEYIKDGKIVPME 66

Query: 336 MVVDMIDKNLDQPECK--NGFLLDGFPRTVPQAEKLDDLLAKRKTAL 470
           + + +++  + +   K  + FL+DGFPR + Q E  +  +   K AL
Sbjct: 67  ITISLLETKMKECHDKGIDKFLIDGFPREMDQCEGFEKSVCPAKFAL 113



 Score = 30.3 bits (65), Expect = 0.39
 Identities = 11/16 (68%), Positives = 14/16 (87%)
 Frame = +1

Query: 628 RSDDNVEALKKRLATY 675
           RSDDN+E++KKR  TY
Sbjct: 135 RSDDNIESIKKRFVTY 150


>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
           Bms1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1121

 Score = 33.1 bits (72), Expect = 0.056
 Identities = 34/126 (26%), Positives = 55/126 (43%), Gaps = 10/126 (7%)
 Frame = +3

Query: 129 PDEDPLXIRAVLLGPPGSGKGTQAPRLKEKYCVCHLS--TGDML----RAEVSSGSDLGR 290
           PDE P  +   ++GPPG+GK T    L  +Y    +S  TG +     +    +  +   
Sbjct: 68  PDEAPPPVIVAVMGPPGTGKSTLIKSLVRRYSKYTISQITGPITVVAGKKRRITFLECPN 127

Query: 291 RLKKVMDEGKLVSDEMVVDMIDKN----LDQPECKNGFLLDGFPRTVPQAEKLDDLLAKR 458
            L  ++D  K+   ++V+ +ID N    ++  E  N     G PR +     L DL  K 
Sbjct: 128 DLSSMIDVAKIA--DLVLLLIDANFGFEMETMEFLNILAPHGMPRIMGVLTHL-DLFKKT 184

Query: 459 KTALDA 476
            T  +A
Sbjct: 185 STLREA 190


>SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 193

 Score = 31.1 bits (67), Expect = 0.23
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +3

Query: 117 TKLKPDEDPLXIRAVLLGPPGSGKGTQAPRLKEK 218
           T + P   P     V++GP GSGK T A  + EK
Sbjct: 4   TPINPTNQPYKYVFVVIGPAGSGKTTMAKAVSEK 37


>SPAC6B12.11 |drc1|sld1|DNA replication protein
           Drc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 30.3 bits (65), Expect = 0.39
 Identities = 15/59 (25%), Positives = 26/59 (44%)
 Frame = +3

Query: 198 APRLKEKYCVCHLSTGDMLRAEVSSGSDLGRRLKKVMDEGKLVSDEMVVDMIDKNLDQP 374
           +P L      C  S  +MLR       D G   +K++ E +  S      ++D+++ QP
Sbjct: 183 SPNLLRVNAPCRKSLSEMLRELKDIEDDYGSNEEKILQEFESFSSSSSESLVDRDISQP 241


>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
           Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
 Frame = +3

Query: 153 RAVLL-GPPGSGKGTQAPRL-KEKYCVCHLSTGDMLRAEVSSGSDLGRRLKKVMDEGKLV 326
           R +L+ GPPG+GK   A  +  E      L  G  + ++++  S+    L+K  +E +  
Sbjct: 259 RGILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESE--SNLRKAFEEAEKN 316

Query: 327 SDEMV-VDMIDKNLDQPECKNG 389
           S  ++ +D ID    + E  NG
Sbjct: 317 SPAIIFIDEIDSIAPKREKTNG 338


>SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase
           Alg6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 506

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -1

Query: 665 KRFFRASTLSSDLFIKASPGDIVSHWFLRRVELFV 561
           K F R++ ++S L I   P    S W+ RR+  FV
Sbjct: 127 KLFMRSTVIASHLLILVPPLMFYSKWWSRRIPNFV 161


>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 368

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = +3

Query: 354 DKNLDQPECKNGFLLDGFPRTVPQAEKLDDLLAKRKTALDAVI-EFGIEDSLLVRRIT 524
           ++N +QP    G    GF R++PQ ++L  ++ +    L+ ++ + G  D  L + IT
Sbjct: 232 NENQEQPSNTVGDDPLGFLRSIPQFQQLRQIVQQNPQMLETILQQIGQGDPALAQAIT 289


>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 481

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 27/103 (26%), Positives = 47/103 (45%)
 Frame = +3

Query: 195 QAPRLKEKYCVCHLSTGDMLRAEVSSGSDLGRRLKKVMDEGKLVSDEMVVDMIDKNLDQP 374
           +AP+L+EKY +C + T   L   + +G    +    VMDE   + +   ++  D  L   
Sbjct: 159 KAPKLREKYDMC-IGTPMRLVQAIQTGLSFEKVEFFVMDEADRLFEPGFIEQTDHILSAC 217

Query: 375 ECKNGFLLDGFPRTVPQAEKLDDLLAKRKTALDAVIEFGIEDS 503
              N      F  T+P   ++++ LAK  T     I  G++D+
Sbjct: 218 TSSN-ICKSLFSATIP--SRVEE-LAKVVTVDPIRIIVGLKDA 256


>SPCC1281.04 |||pyridoxal reductase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 333

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +1

Query: 607 PGEALIKRSDDNVEALKKRLAT 672
           PG   ++R++ N+ ALKK L++
Sbjct: 282 PGSTTVQRAESNLSALKKSLSS 303


>SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner
           membrane translocase Oxa102|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 409

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -1

Query: 665 KRFFRASTLSSDLFIKASPGDIVSHWF 585
           K+FFR   L+S LF    P  I  +WF
Sbjct: 270 KKFFRFLCLASPLFTMNFPMAIFMYWF 296


>SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 542

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = +3

Query: 234 LSTGDMLRAEVSSGSDLGRRLKKVMDEGKLVSDEMV-VDMIDKNLDQPECKNGFLLDGFP 410
           L TG  ++  V   +  G    K+ +  K +  ++  +++++ N+D PE  N      F 
Sbjct: 211 LMTGKKIKGTVLIDAANGVGAAKIKELAKYIDPKLFPIEIVNDNIDNPELLNNSCGADFV 270

Query: 411 RT 416
           RT
Sbjct: 271 RT 272


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,137,498
Number of Sequences: 5004
Number of extensions: 61373
Number of successful extensions: 207
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)