Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_J18
         (886 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   1.6  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   3.7  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   4.9  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   4.9  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   6.5  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 16/39 (41%), Positives = 18/39 (46%)
 Frame = -3

Query: 287 SVPCRPSRPDGGAFRRSRGTRREEHHLLRNRPCTYRSHC 171
           +V CR S P G A   S  T R E  L     C Y +HC
Sbjct: 711 NVMCRTSGPRGVAI-VSASTARSEQFL-----CRYEAHC 743


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 419  LRVAPEEHPVLLTEAPLNPXANREKM 496
            LR+ P  H V+ T   +NP  + EK+
Sbjct: 1461 LRLGPCWHAVMTTYPRINPDNHNEKL 1486


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +1

Query: 610 TVSPTPXPSTKDTHSPXPSWVWTW 681
           TVS T  PST +  +    W+  W
Sbjct: 403 TVSVTSKPSTMERQTQTEVWIPKW 426


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +3

Query: 714  ILTXRGYSFTTTAXRENRS*HQGKTVL 794
            +L  +G    TTA   N+   QGK V+
Sbjct: 1132 LLAQKGLKLATTASHANQLNRQGKQVI 1158


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +3

Query: 621 HTVXIYEGYALPXAILGLDLAGRDLTDYLMXI 716
           H +  +  +A+  +ILG      + TDY M I
Sbjct: 394 HPMSSFREFAVSTSILGDKKTAEENTDYFMPI 425


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 231,502
Number of Sequences: 438
Number of extensions: 5649
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28766349
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)