Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_J15
         (889 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun...   157   1e-39
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual    28   1.5  
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    26   6.2  
SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   8.2  

>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 214

 Score =  157 bits (382), Expect = 1e-39
 Identities = 86/197 (43%), Positives = 111/197 (56%), Gaps = 1/197 (0%)
 Frame = +2

Query: 143 LNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAP-AANLPHVLRWYNQIASYTSAERKTW 319
           L  LN +L +KS++ GY PSQAD  VF+ VG AP  A  P+  RWY QIA+Y  A     
Sbjct: 12  LKQLNDFLLDKSFIEGYEPSQADAVVFKAVGVAPDTAKYPNGARWYKQIATYDLA----- 66

Query: 320 SQGTSPLXXXXXXXXXXXXXXXXXXXXVDLFGSGXXXXXXXXXXXXXXXLKAYADKKSKK 499
              T P                     +DLFGS                 + Y  KK+ K
Sbjct: 67  ---TLPGTAKEVSAYGPEGAAAAEEDEIDLFGSDEEEDPEAERIKAERVAE-YNKKKAAK 122

Query: 500 PALIAKSSILLDVKPWDDETDMKEMENQVRTIEMEGLLWGASKLVPVGYGINKLQIMCVI 679
           P  + KS + LDVKPWDDET M E+E  VR+I+M+GL+WG SKLVPVG+G+NK QI  V+
Sbjct: 123 PKAVHKSLVTLDVKPWDDETPMDELEKAVRSIQMDGLVWGLSKLVPVGFGVNKFQINLVV 182

Query: 680 EDDKVSVDLLTEKIQEF 730
           EDDKVS++ L E+++ F
Sbjct: 183 EDDKVSLEALQEELEGF 199



 Score = 31.1 bits (67), Expect = 0.22
 Identities = 12/22 (54%), Positives = 18/22 (81%)
 Frame = +3

Query: 711 QKKFKNFEDFVQSVDIAAFNKI 776
           Q++ + FED+VQS DIAA +K+
Sbjct: 193 QEELEGFEDYVQSTDIAAMSKL 214


>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 978

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 15/44 (34%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
 Frame = +3

Query: 711 QKKFKNFEDFVQSVDIAAFNK-I*TAITCNIFISATFSIKSHLQ 839
           +KK K F+D + S+D + F+  + +AIT ++  +AT S ++  Q
Sbjct: 413 RKKLKIFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQ 456


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = -1

Query: 628 FGGSPEKAFHFNSAYLVFHFLHIGFIIP-WLDIKENR 521
           FG S     HF+  Y VF    IG I P W++   N+
Sbjct: 485 FGNSYYNDHHFHYGYFVFTAAVIGHIDPDWINTGNNK 521


>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 475

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
 Frame = -3

Query: 281 DYTIVVRGEG*RPAPCQLAQILEHQLEK----ECIQTRSFSQLNIGSSH*XPWAVLTSPT 114
           +Y +VV G G  P  C +   L  QLE     E +    F + ++      P A L S  
Sbjct: 308 NYPVVVNGNGVNPYLCDVQAFLTSQLEYYFSIENLCKDMFLRKHMDDEGYVPLAFLASFN 367

Query: 113 AIVSFS 96
            I SFS
Sbjct: 368 RIKSFS 373


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,107,726
Number of Sequences: 5004
Number of extensions: 60359
Number of successful extensions: 161
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)