SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_J13
         (895 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S80905-1|AAB50686.1|  382|Homo sapiens Con1 protein.                   30   9.9  

>S80905-1|AAB50686.1|  382|Homo sapiens Con1 protein.
          Length = 382

 Score = 30.3 bits (65), Expect = 9.9
 Identities = 31/144 (21%), Positives = 39/144 (27%), Gaps = 2/144 (1%)
 Frame = +2

Query: 257 KXXXXPPXXPXKGGGXKXGXPXGXPXXXSPXXXXXX--PXPXGXXXXGXXKXXGGXXKXX 430
           K    PP    K    +   P G P    P        P P      G     G   +  
Sbjct: 186 KPQGPPPQGDNKSQSARS--PPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKSQGP 243

Query: 431 XPXXXXXXPPPXGGXKIXKNXXXXXXPXXPXXKF*XXXXXXPKXGGXPXKKFXXKGPQKX 610
            P      PPP GG K   +      P  P  +        P   G P        P + 
Sbjct: 244 PPPGKPQGPPPQGGSKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGP-----PPQG 298

Query: 611 XNPXKXPXXXXXXKAPPPXXXXKN 682
            N  + P      + PPP    K+
Sbjct: 299 GNKPQGPPPPGKPQGPPPQGGSKS 322


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,490,284
Number of Sequences: 237096
Number of extensions: 1005593
Number of successful extensions: 1637
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 941
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1552
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11492727354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -