Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_J12
         (898 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC970.05 |rpl3601|rpl36-1|60S ribosomal protein L36|Schizosacc...    64   3e-11
SPBC405.07 |rpl3602|rpl36-2, rpl36|60S ribosomal protein L36|Sch...    64   3e-11
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo...    28   2.1  
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    28   2.1  
SPAC21E11.06 |tif224||translation initiation factor eIF2B delta ...    27   2.7  
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb...    27   3.6  
SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase Ssp2|Schiz...    26   8.4  

>SPCC970.05 |rpl3601|rpl36-1|60S ribosomal protein
           L36|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 99

 Score = 64.1 bits (149), Expect = 3e-11
 Identities = 32/56 (57%), Positives = 41/56 (73%)
 Frame = +1

Query: 235 LVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMR 402
           +VREV G A YE+R MEL++ S+DKRA K  K+RLGT  RAK K EEL++V+   R
Sbjct: 41  IVREVAGFAPYERRVMELIRNSQDKRARKLAKKRLGTLKRAKGKIEELTSVIQSSR 96


>SPBC405.07 |rpl3602|rpl36-2, rpl36|60S ribosomal protein
           L36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 99

 Score = 64.1 bits (149), Expect = 3e-11
 Identities = 32/56 (57%), Positives = 41/56 (73%)
 Frame = +1

Query: 235 LVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMR 402
           +VREV G A YE+R MEL++ S+DKRA K  K+RLGT  RAK K EEL++V+   R
Sbjct: 41  IVREVAGFAPYERRVMELIRNSQDKRARKLAKKRLGTLKRAKGKIEELTSVIQSSR 96


>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = -2

Query: 429 MVMSLGGCLPHLSEHVAKFFTLPLGADVCAQSSLQELQSTLV 304
           +V SL G    L +  A+FFT PL ++VCA + +   +  ++
Sbjct: 544 IVKSLNGEYIALEKIEAQFFTSPLVSNVCAYADVNHAKPVVI 585


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
 Frame = +1

Query: 217  PSLSCDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAK-RKREELSNVLA 393
            PSL+   +  ++ HA      ++ L+VSKD       KRR+ THI  +  +R  LS V  
Sbjct: 1111 PSLTESCI--LINHADILSSILDYLQVSKD-------KRRMATHILGQINQRLTLSQVRN 1161

Query: 394  QMR 402
            Q+R
Sbjct: 1162 QLR 1164


>SPAC21E11.06 |tif224||translation initiation factor eIF2B delta
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +2

Query: 365 SVKNLATCSLR*GRQPPRLITITI 436
           SVKNL   SL+    PPRLIT+ +
Sbjct: 421 SVKNLKLLSLKYDVTPPRLITVCV 444


>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 990

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 14/37 (37%), Positives = 26/37 (70%), Gaps = 3/37 (8%)
 Frame = +3

Query: 237  STRSCRTRSI*EEGY---GVT*GVKRQACSEVLEATI 338
            +TR+C T+S+ EEG+    V+  +KR+  +++L+A I
Sbjct: 928  ATRACLTQSLEEEGFPSRNVSNEIKRRFLTDLLKARI 964


>SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase
           Ssp2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 576

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
 Frame = +1

Query: 235 LVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRL----GTHIRAKRK 366
           ++RE +G   + K  +     ++ K ALKF+ R+L      H+R +R+
Sbjct: 35  IIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVERE 82


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,746,937
Number of Sequences: 5004
Number of extensions: 45813
Number of successful extensions: 109
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)