Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_J11
         (831 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch...    30   0.46 
SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6 |Schizosaccharo...    26   7.5  
SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase Byr2...    25   10.0 
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe...    25   10.0 

>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
           Trk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 880

 Score = 29.9 bits (64), Expect = 0.46
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = +3

Query: 390 IALFKLFYYXQRFEMFLQNSMLR 458
           + LFKL++Y +R++M + N+ LR
Sbjct: 101 LTLFKLYFYNKRYDMVITNNKLR 123


>SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 777

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = -2

Query: 329 DLVHH-HEIFVGFHVCVAVLAGLDVEVLGDFVVLSFIVDLVNVVEKRQNLLLLF 171
           DL HH +  F GF VC+  ++  + + + D + L   ++ +NVV    N++ +F
Sbjct: 243 DLEHHDYRSFRGF-VCLMQISNREKDWIVDTLELREELEALNVVFTNPNIIKVF 295


>SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase
           Byr2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 659

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = +2

Query: 233 VLQSRPGLQHRGQQGLLHKHESLRKFHDDVQGRIPSQEFGILDLLRKN 376
           + Q+  GL++   +G++H+         D +G+I   +FGI   L  N
Sbjct: 503 IKQTLKGLEYLHSRGIVHRDIKGANILVDNKGKIKISDFGISKKLELN 550


>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 488

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -2

Query: 341 GKESDLVHHHEIFVGFHVCVAVLAGLDVEVLG 246
           G  S  +HHH++ +  H  +  L G   EV G
Sbjct: 279 GSRSGAIHHHDVRIANHQ-IGTLQGHSSEVCG 309


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,241,594
Number of Sequences: 5004
Number of extensions: 37404
Number of successful extensions: 98
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)