Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_J10
         (847 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0400 - 22608519-22608844,22609044-22609122                       29   4.7  
07_03_1751 - 29215074-29216270                                         28   8.1  
06_03_0674 + 23422004-23422552,23423295-23423369,23424360-234244...    28   8.1  

>02_04_0400 - 22608519-22608844,22609044-22609122
          Length = 134

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = -2

Query: 687 GGGGGGFXXXGXXKXGGXXGGXKXFFXPP 601
           GGGGGG    G    GG  GG    + PP
Sbjct: 68  GGGGGGGGGGGGGGGGGGGGGGGGGYYPP 96


>07_03_1751 - 29215074-29216270
          Length = 398

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = -2

Query: 687 GGGGGGFXXXGXXKXGGXXGGXK 619
           GG GGGF   G    GG  GG K
Sbjct: 339 GGAGGGFGGGGGAGAGGGFGGGK 361


>06_03_0674 +
           23422004-23422552,23423295-23423369,23424360-23424443,
           23424749-23424991,23425348-23425515,23425608-23425727,
           23426372-23427016
          Length = 627

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -2

Query: 696 FXXGGGGGGFXXXGXXKXGGXXGG 625
           +  GGGGGG+   G    GG  GG
Sbjct: 556 YSGGGGGGGYSGGGGGYSGGGRGG 579


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,039,239
Number of Sequences: 37544
Number of extensions: 358078
Number of successful extensions: 1932
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1747
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)