Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_J05
         (916 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po...    33   0.057
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote...    32   0.13 
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha...    30   0.53 
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    27   3.7  
SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces pomb...    27   4.9  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    26   6.5  
SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces p...    26   6.5  

>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 507

 Score = 33.1 bits (72), Expect = 0.057
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = +2

Query: 224 DYDSAAHNTKYNQYLKMSTSTCNCNARDRVVYGGNSADSTRE 349
           ++ +  +++ YN+   M TS+C+C++  +  YGGN A    E
Sbjct: 41  EFTNVGYSSTYNEITNMDTSSCSCSSTPK-SYGGNLAPFDEE 81


>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
           Mug36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1646

 Score = 31.9 bits (69), Expect = 0.13
 Identities = 17/57 (29%), Positives = 32/57 (56%)
 Frame = +2

Query: 176 SNQDLEDKLYNSILTGDYDSAAHNTKYNQYLKMSTSTCNCNARDRVVYGGNSADSTR 346
           ++QD ED++ N  L  + D ++HN   +  L+   ++ +   +D +VY G +  STR
Sbjct: 149 ASQDFEDEVINEGLESEIDGSSHNL-LDSILQKCLASTSVLMQDALVYIGTANMSTR 204


>SPAC4F8.11 |||WD repeat protein, human WDR24
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 846

 Score = 29.9 bits (64), Expect = 0.53
 Identities = 10/37 (27%), Positives = 22/37 (59%)
 Frame = +2

Query: 224 DYDSAAHNTKYNQYLKMSTSTCNCNARDRVVYGGNSA 334
           +Y   +HN  +N + + S ++ +  +R+ V+  GNS+
Sbjct: 611 NYSGTSHNEMFNSFHRSSVTSASIKSREAVLSAGNSS 647


>SPBC12C2.02c |ste20|ste16|sterility protein
           Ste20|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1309

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -2

Query: 450 AFTIVSSSKASLNSRL*MKNRTSFSYLAGWKNHCSLVLS 334
           + T  +S+  S  S L  K  T FSY AG  + CS+ +S
Sbjct: 117 SLTRSASATVSRKSSLQEKYSTRFSYKAGCSDSCSVTVS 155


>SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = +2

Query: 302 RDRVVYGGNSADSTREQWFFQPAKYENDVLFFIYN 406
           R R+V G ++A  + + W F   +Y   ++F+++N
Sbjct: 162 RQRIVVGKHAAHFSLDHWIF-VVEYYAPIVFYVFN 195


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +2

Query: 137 AGVVELSADSMSPSNQDLEDKLYNSILTGDYDSA 238
           A +V+ S    +P + DLE  +  ++LTGD  SA
Sbjct: 537 AEIVKDSFKIFNPEDSDLEKNITEALLTGDVLSA 570


>SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 467

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +2

Query: 164 SMSPSNQDLEDKLYNSILTGDYDSAAHNTKYNQY 265
           S+SPS   LE +++N I++G + S + +   N Y
Sbjct: 205 SLSPSVACLEKRMFNRIISGFHASISTHVCQNYY 238


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,895,701
Number of Sequences: 5004
Number of extensions: 50283
Number of successful extensions: 148
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)