Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_J05
         (916 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0778 + 6024154-6024315,6024725-6024802,6024909-6025071,602...    30   2.9  
11_01_0420 - 3230936-3231710,3232265-3233885,3234411-3234834           29   5.2  
09_06_0060 + 20593519-20594667,20594898-20594927,20595237-20595326     29   6.8  
05_05_0096 - 22351488-22351742                                         29   6.8  

>01_01_0778 +
           6024154-6024315,6024725-6024802,6024909-6025071,
           6025484-6025788,6025897-6025961,6026570-6026763,
           6027233-6027441,6028147-6028325,6029345-6029459,
           6029520-6029558
          Length = 502

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
 Frame = +2

Query: 119 CVLAASAGVVEL--SADSMSPSNQDLEDKLYNSILTGDYDSAAHNTKYNQ-YLKMSTSTC 289
           C+L A AG + L  ++D   PS +      Y   +T D +S   N +Y+Q YL++STS  
Sbjct: 438 CLLTAFAGYLGLVSASDLARPSQRSKMPLTYRRQITVDMNSV-ENKEYSQKYLQISTSGQ 496

Query: 290 N 292
           N
Sbjct: 497 N 497


>11_01_0420 - 3230936-3231710,3232265-3233885,3234411-3234834
          Length = 939

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +2

Query: 167 MSPSNQDLEDKLYNSILTGDYDSAAHNTKYNQYLKMSTSTCN 292
           +SPS  D   K  N +LT   +S  HN+   + LK+ ++T N
Sbjct: 495 LSPSQDDTHSKGSNDLLTQYANSNEHNSLLTRTLKIFSTTDN 536


>09_06_0060 + 20593519-20594667,20594898-20594927,20595237-20595326
          Length = 422

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 33/107 (30%), Positives = 51/107 (47%), Gaps = 2/107 (1%)
 Frame = -2

Query: 345 LVLSALLPPYTTRSRALQLQVDVLIFKYWLYLVLWAALS*SPVRM-LLYSLSSRSWL-EG 172
           L LS     + + S  L L  ++L+    L  VL +  S  P  + LL  +S+R  L E 
Sbjct: 96  LFLSTFNSLFVSGSSPLPLHPELLLR---LLSVLSSTASYFPCALHLLRDVSTRLPLPEP 152

Query: 171 LMLSADSSTTPALAASTHIANTXEKFHFVRSLFRSXSRLQIKXLRNS 31
           L+L++ +    A A S H+A +   FH +RSL  S +    + L  S
Sbjct: 153 LVLASHNLLIEAAARSGHLAVSISLFHRLRSLHVSPNAETYRILTQS 199


>05_05_0096 - 22351488-22351742
          Length = 84

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 18/41 (43%), Positives = 21/41 (51%)
 Frame = +3

Query: 72  GKGS*QNETSRLCSQCACSPPAPASWNYPRTA*ALLTKTSR 194
           G GS     SR   Q +CSPP P S ++PR   A L K  R
Sbjct: 25  GAGSEAGNGSR--HQASCSPPPPPSSSFPRRC-ARLVKEQR 62


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,145,645
Number of Sequences: 37544
Number of extensions: 340227
Number of successful extensions: 892
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 892
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2600672280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)