Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_J03
         (882 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    27   2.7  
SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb...    27   4.7  
SPBC1718.02 |hop1||linear element associated protein Hop1|Schizo...    26   6.2  
SPCC16C4.12 |||NatB N-acetyltransferase complex catalytic subuni...    26   6.2  

>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1717

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +2

Query: 164  QFLGTSQAGPIQRDTFHEACEE 229
            Q +  SQAGP  RDT H   +E
Sbjct: 1338 QLISGSQAGPFARDTIHALMDE 1359


>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 923

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 18/63 (28%), Positives = 28/63 (44%)
 Frame = +3

Query: 39  DFGNSNFLRKRTSSIAMKXXXXXXXXXXXXXXXYHFLVGDISSSLVHHKLVQYNAIPFMK 218
           D+GN   + + TSS+++K               Y+    D+    V   + QY AIPFM+
Sbjct: 242 DYGNVYGVPEHTSSLSLKETNNSDAGYTEPYRLYNV---DLFEYEVDSPMSQYGAIPFMQ 298

Query: 219 RVK 227
             K
Sbjct: 299 AHK 301


>SPBC1718.02 |hop1||linear element associated protein
           Hop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 528

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 155 ADKKMIGLNTDAQGQTEEHERFHCDR 78
           A+KK   LN +    TE+ E F C+R
Sbjct: 328 AEKKKALLNCECGDSTEDSEMFQCER 353


>SPCC16C4.12 |||NatB N-acetyltransferase complex catalytic subunit
           Nat3 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 180

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = -2

Query: 176 YQGTGYIADKKMIGLNTDAQGQTEEHERFHCDRRRALSEEIRVTKILRN 30
           Y+G GY   +++IG  ++  G+ E+      D R+ LS ++    I  N
Sbjct: 123 YKGLGYSVYRRVIGYYSNPHGKDED----SFDMRKPLSRDVNRESIREN 167


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,135,680
Number of Sequences: 5004
Number of extensions: 58111
Number of successful extensions: 151
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)