Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_J03
         (882 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0889 - 32532495-32533832,32533919-32534151,32534321-325344...    31   0.93 
09_04_0543 - 18442571-18443111,18443232-18443426,18443507-184440...    29   6.5  

>02_05_0889 -
           32532495-32533832,32533919-32534151,32534321-32534461,
           32534564-32535521
          Length = 889

 Score = 31.5 bits (68), Expect = 0.93
 Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
 Frame = -2

Query: 245 TAVEVVLHTLHERYRVVLDQLVMYQGTGYI------ADKKMIGLNTDAQGQTEEHERFHC 84
           T  EV  HT  E   +++   V Y  TG++      AD  MI   TD    TEE +  H 
Sbjct: 517 TMSEVRRHTTPESAWIIVHGHV-YDCTGFLKDHPGGADSIMINAGTDC---TEEFDAIHS 572

Query: 83  DRRRALSEEIRVTKIL 36
           D+ R L E  R+ +++
Sbjct: 573 DKARGLLEMYRIGELI 588


>09_04_0543 -
           18442571-18443111,18443232-18443426,18443507-18444045,
           18444205-18444375,18444794-18445219
          Length = 623

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = -2

Query: 410 LVDVYSDVVTQ-AGSAFTLHAHI-HVRVADTARSNVHGRLTVERVQR 276
           LVD+  +V +Q A  AF   A + H  V+ T RSN HG L   R  R
Sbjct: 51  LVDLSKEVPSQFARPAFQRDASLDHSLVSPTQRSNSHGGLAERRAAR 97


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,370,156
Number of Sequences: 37544
Number of extensions: 378924
Number of successful extensions: 749
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 749
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)