Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_J02
         (877 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical pr...    29   5.8  
Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical p...    29   5.8  
Z14092-9|CAA78474.1| 1429|Caenorhabditis elegans Hypothetical pr...    29   5.8  
M12069-1|AAA70191.1| 1429|Caenorhabditis elegans protein ( C.ele...    29   5.8  
AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein.      29   5.8  
Z74041-8|CAA98519.2|  610|Caenorhabditis elegans Hypothetical pr...    28   7.6  
DQ482732-1|ABF20555.1|  610|Caenorhabditis elegans SNF-11 protein.     28   7.6  
AY529124-1|AAT02634.1|  610|Caenorhabditis elegans GABA transpor...    28   7.6  

>Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical protein
            C35C5.1 protein.
          Length = 2962

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +1

Query: 151  KSKNVDAVFVEKQKKILSFFQDVSQLNTDDEY 246
            +SK+VDA    KQK ++   Q V  LN  +EY
Sbjct: 2277 RSKSVDAPKTSKQKTVIRRSQSVCDLNDVNEY 2308


>Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical
            protein C35C5.1 protein.
          Length = 2962

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +1

Query: 151  KSKNVDAVFVEKQKKILSFFQDVSQLNTDDEY 246
            +SK+VDA    KQK ++   Q V  LN  +EY
Sbjct: 2277 RSKSVDAPKTSKQKTVIRRSQSVCDLNDVNEY 2308


>Z14092-9|CAA78474.1| 1429|Caenorhabditis elegans Hypothetical
           protein R107.8 protein.
          Length = 1429

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 14/42 (33%), Positives = 17/42 (40%)
 Frame = +3

Query: 54  VCFXAGNHEVCLDSGWACSRRAQQCSTKTEHHKVKKCGCRIC 179
           VC  A N+E CL  G  C     +C  K   H   +    IC
Sbjct: 692 VCNQACNNEECLYDGMDCLPAVVRCPVKIREHCASRFANGIC 733


>M12069-1|AAA70191.1| 1429|Caenorhabditis elegans protein (
           C.elegans homeotic lin-12 protein gene, complete cds. ).
          Length = 1429

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 14/42 (33%), Positives = 17/42 (40%)
 Frame = +3

Query: 54  VCFXAGNHEVCLDSGWACSRRAQQCSTKTEHHKVKKCGCRIC 179
           VC  A N+E CL  G  C     +C  K   H   +    IC
Sbjct: 692 VCNQACNNEECLYDGMDCLPAVVRCPVKIREHCASRFANGIC 733


>AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein.
          Length = 2962

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +1

Query: 151  KSKNVDAVFVEKQKKILSFFQDVSQLNTDDEY 246
            +SK+VDA    KQK ++   Q V  LN  +EY
Sbjct: 2277 RSKSVDAPKTSKQKTVIRRSQSVCDLNDVNEY 2308


>Z74041-8|CAA98519.2|  610|Caenorhabditis elegans Hypothetical
           protein T03F7.1 protein.
          Length = 610

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = -1

Query: 613 KFLQHFHIHKHFRVYFIRSRNNETVAIRALDNSDVEGIQE 494
           K L H HIH++ + +F+  + N TV   A D S V  ++E
Sbjct: 162 KVLTHDHIHEYKKQFFVGEKMNWTVC-SAADLSVVSPVKE 200


>DQ482732-1|ABF20555.1|  610|Caenorhabditis elegans SNF-11 protein.
          Length = 610

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = -1

Query: 613 KFLQHFHIHKHFRVYFIRSRNNETVAIRALDNSDVEGIQE 494
           K L H HIH++ + +F+  + N TV   A D S V  ++E
Sbjct: 162 KVLTHDHIHEYKKQFFVGEKMNWTVC-SAADLSVVSPVKE 200


>AY529124-1|AAT02634.1|  610|Caenorhabditis elegans GABA transporter
           protein protein.
          Length = 610

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = -1

Query: 613 KFLQHFHIHKHFRVYFIRSRNNETVAIRALDNSDVEGIQE 494
           K L H HIH++ + +F+  + N TV   A D S V  ++E
Sbjct: 162 KVLTHDHIHEYKKQFFVGEKMNWTVC-SAADLSVVSPVKE 200


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,498,345
Number of Sequences: 27780
Number of extensions: 333314
Number of successful extensions: 754
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)