Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_J01
         (892 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0500 + 3866752-3866799,3866854-3866898,3867398-3867679           28   8.7  
01_05_0510 - 22816607-22816916,22817005-22817177,22817341-228176...    28   8.7  

>11_01_0500 + 3866752-3866799,3866854-3866898,3867398-3867679
          Length = 124

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -3

Query: 698 ASPKGRKXGQVSGKRQGRNRRAHEG 624
           AS KGR  G+V G+RQ     A EG
Sbjct: 73  ASAKGRSGGRVKGERQSHPAGAREG 97


>01_05_0510 -
           22816607-22816916,22817005-22817177,22817341-22817607,
           22817951-22818393,22818474-22818635,22820991-22821414,
           22823177-22823227
          Length = 609

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 11/65 (16%)
 Frame = +2

Query: 536 VRASLLSTLKSEVAKPDRTIKIPGVSPW--------KLPRALSCSDPAAY-RIPVRPFS- 685
           V A++ S ++ ++ +PD T+K P    +        KLP +L  S  AA+ +IPV  F  
Sbjct: 148 VAAAVASYVRDQMDRPDETVKFPSCDAYFDTIQSKKKLPLSLQESLTAAFAQIPVSSFPD 207

Query: 686 -PSGK 697
            P+G+
Sbjct: 208 VPNGR 212


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,939,056
Number of Sequences: 37544
Number of extensions: 357230
Number of successful extensions: 917
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 915
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)