Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_J01
         (892 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK123353-1|BAC85591.1|  195|Homo sapiens DC3) mRNA.  protein.          32   2.4  
BC057783-1|AAH57783.1|  275|Homo sapiens SFRS2B protein protein.       31   5.6  

>AK123353-1|BAC85591.1|  195|Homo sapiens DC3) mRNA.  protein.
          Length = 195

 Score = 32.3 bits (70), Expect = 2.4
 Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 1/94 (1%)
 Frame = +2

Query: 530 PPVRASLLSTLKSEVAKPDRTIKIPGVSPWKLPRALSCSDPAAYRIPVRPFSPSGKRGAF 709
           PP+   +L  +   +  P    +IPG+ P  +P  L  + P    +  R     G++ A 
Sbjct: 27  PPMPPGILPPMLPPMGAPPPLTQIPGMVPPMMPGMLMPAVPVTAAVSTR-----GQQVAG 81

Query: 710 S*LTLXVSXXRCRSXAPSWAV-CTNPPFSPTAAP 808
           S L    S   CR+     ++  ++PP SP A P
Sbjct: 82  SALQSRESDLECRTMTSILSLFSSHPPRSPAALP 115


>BC057783-1|AAH57783.1|  275|Homo sapiens SFRS2B protein protein.
          Length = 275

 Score = 31.1 bits (67), Expect = 5.6
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = -3

Query: 710 RKRHASPKGRKXGQVSGKRQGRNRRAHEGASRG 612
           R R   P+GR  G   G+R    RR H   SRG
Sbjct: 99  RSRQGEPRGRSRGGGYGRRSRSPRRRHRSRSRG 131


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,668,520
Number of Sequences: 237096
Number of extensions: 1841190
Number of successful extensions: 3943
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3933
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11437206932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)