Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_J01
         (892 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68751-6|CAA92976.1|  202|Caenorhabditis elegans Hypothetical pr...    29   4.5  
U88166-3|AAO44910.1|  160|Caenorhabditis elegans Collagen protei...    29   4.5  

>Z68751-6|CAA92976.1|  202|Caenorhabditis elegans Hypothetical
           protein T05E11.8 protein.
          Length = 202

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -3

Query: 704 RHASPKGRKXGQVSGKRQGRNRRA-HEGASRGKR 606
           RH   KG K G+  GK+ G  +R  H G   GK+
Sbjct: 163 RHGGRKGGKGGKHFGKKNGDKKRGPHGGDEEGKK 196


>U88166-3|AAO44910.1|  160|Caenorhabditis elegans Collagen protein
           53 protein.
          Length = 160

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 15/33 (45%), Positives = 16/33 (48%)
 Frame = -2

Query: 711 EKAPRFPEGEKGRTGIR*AAGSEQESARGSFQG 613
           E  PR P GEKGRTG     G   E     +QG
Sbjct: 81  ETGPRGPPGEKGRTGRDGEDGLPGERGERGYQG 113


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,264,722
Number of Sequences: 27780
Number of extensions: 244617
Number of successful extensions: 540
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 540
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)