Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_I24
         (920 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein ...    24   1.7  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   3.0  

>AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein
           protein.
          Length = 87

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = +3

Query: 636 PRPXRGAVXGXXPPGPPP 689
           PR  RG V    PPGPPP
Sbjct: 42  PRSNRGPVL--FPPGPPP 57


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 10/31 (32%), Positives = 11/31 (35%)
 Frame = +3

Query: 636 PRPXRGAVXGXXPPGPPPPXPXXXXXPPXXG 728
           P P +G   G  P  PP   P      P  G
Sbjct: 40  PNPSQGPPPGGPPGAPPSQNPSQMMISPASG 70



 Score = 23.0 bits (47), Expect = 3.9
 Identities = 11/35 (31%), Positives = 11/35 (31%)
 Frame = +2

Query: 197 GXXXPPXGGGXWXPPPXXXXXVXXPPPPXXGGKKP 301
           G   PP  G    P P        PP P   G  P
Sbjct: 406 GGQLPPSAGAPMPPIPNMSNMSGMPPLPNMPGSMP 440


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,385
Number of Sequences: 438
Number of extensions: 6462
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29992872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)